SMTL ID : 6w58.1

hPGDS complexed with an aza-quinoline

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.39 Å

Oligo State

homo-dimer

Ligands

1 x GSH: GLUTATHIONE(Non-covalent)

GSH.1: 11 residues within 4Å: Chain A: Y.8, F.9, R.14, W.39, K.50, I.51, P.52, Q.63, S.64 Chain B: D.97 Ligands: SWS.2 7 PLIP interactions: 6 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:K.50 Hydrogen bonds: A:I.51, A:I.51, A:Q.63, A:S.64, B:D.97 Salt bridges: A:R.14

2 x SWS: 7-(azetidin-1-yl)-~{N}-[4-(2-oxidanylpropan-2-yl)cyclohexyl]-1,6-naphthyridine-3-carboxamide(Non-covalent)

SWS.2: 14 residues within 4Å: Chain A: F.9, M.11, G.13, R.14, Q.36, W.39, D.96, M.99, W.104, Y.152, I.155, C.156, L.199 Ligands: GSH.1 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.9, A:Y.152 pi-Stacking: A:W.104, A:W.104 SWS.3: 11 residues within 4Å: Chain B: F.9, M.11, G.13, R.14, W.39, M.99, W.104, A.105, Y.152, I.155, C.156 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:F.9, B:F.9, B:R.14, B:W.104, B:A.105, B:Y.152, B:I.155 pi-Stacking: B:W.104, B:W.104, B:W.104

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cadilla, R. et al., The exploration of aza-quinolines as hematopoietic prostaglandin D synthase (H-PGDS) inhibitors with low brain exposure. Bioorg.Med.Chem. (2020)

Release Date

2020-11-04

Peptides

Hematopoietic prostaglandin D synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Hematopoietic prostaglandin D synthase

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