SMTL ID : 6w9m.1

Structure of the Ancestral Glucocorticoid Receptor 2 ligand binding domain in complex with vamorolone and SHP coregulator fragment

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.59 Å

Oligo State

hetero-1-1-mer

Ligands

1 x TUV: vamorolone(Non-covalent)

TUV.1: 17 residues within 4Å: Chain A: M.34, L.37, N.38, G.41, Q.44, W.74, M.75, M.78, R.85, F.97, Q.116, L.206, F.209, C.210, T.213, V.221, F.223 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.37, A:W.74, A:F.97, A:F.209 Hydrogen bonds: A:N.38, A:Q.44, A:R.85, A:Q.116, A:T.213 Water bridges: A:L.82

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: E.14, P.15, Q.44, A.48, W.51, M.78, S.81, K.141 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.44, A:S.81, A:K.141, A:K.141 GOL.3: 7 residues within 4Å: Chain A: Y.72, S.76, T.148, H.200, V.203, G.204, L.207 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.72, A:S.76, A:H.200

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, X. et al., Disruption of a key ligand-H-bond network drives dissociative properties in vamorolone for Duchenne muscular dystrophy treatment. Proc.Natl.Acad.Sci.USA (2020)

Release Date

2020-11-04

Peptides

Glucocorticoid Receptor: A
Nuclear receptor subfamily 0 group B member 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glucocorticoid Receptor

Nuclear receptor subfamily 0 group B member 2

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