SMTL ID : 6wa8.1

Crystal structure of the E. coli transcription termination factor Rho

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

homo-hexamer

Ligands

6 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 9 residues within 4Å: Chain A: K.181, A.182, G.183, K.184, T.185, M.186, E.211, E.215, F.355 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:K.181, A:A.182, A:G.183, A:K.184, A:T.185, A:T.185, A:E.215, A:E.215 Salt bridges: A:K.184, A:K.184 pi-Stacking: A:F.355 ATP.2: 12 residues within 4Å: Chain A: R.366, E.369 Chain B: T.158, P.180, K.181, A.182, G.183, K.184, T.185, M.186, R.212, F.355 13 PLIP interactions: 10 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:K.181, B:A.182, B:G.183, B:K.184, B:T.185, B:M.186, B:R.212, A:E.369 Salt bridges: B:K.184, A:R.366, A:K.367 pi-Stacking: B:F.355, B:F.355 ATP.3: 11 residues within 4Å: Chain B: R.366 Chain C: P.180, K.181, A.182, G.183, K.184, T.185, M.186, R.212, R.353, F.355 10 PLIP interactions: 9 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:K.181, C:A.182, C:G.183, C:K.184, C:T.185, C:M.186, C:R.212, C:R.353 pi-Stacking: C:F.355 Salt bridges: B:R.366 ATP.4: 12 residues within 4Å: Chain C: R.366, K.367, E.369 Chain D: P.180, K.181, A.182, G.183, K.184, T.185, M.186, R.212, F.355 12 PLIP interactions: 8 interactions with chain D, 4 interactions with chain C Hydrogen bonds: D:K.181, D:A.182, D:G.183, D:K.184, D:T.185, D:M.186, D:R.212, C:E.369, C:E.369 pi-Stacking: D:F.355 Salt bridges: C:R.366, C:K.367 ATP.5: 13 residues within 4Å: Chain D: R.366, K.367, E.369 Chain E: T.158, P.180, K.181, A.182, G.183, K.184, T.185, M.186, R.212, F.355 16 PLIP interactions: 13 interactions with chain E, 3 interactions with chain D Hydrogen bonds: E:K.181, E:A.182, E:G.183, E:G.183, E:K.184, E:T.185, E:T.185, E:M.186, D:R.366, D:K.367 Salt bridges: E:K.184, E:K.184, E:R.212, D:R.366 pi-Stacking: E:F.355, E:F.355 ATP.6: 10 residues within 4Å: Chain E: R.366 Chain F: P.180, K.181, A.182, G.183, K.184, T.185, M.186, R.212, F.355 11 PLIP interactions: 10 interactions with chain F, 1 interactions with chain E Hydrogen bonds: F:K.181, F:K.181, F:A.182, F:G.183, F:K.184, F:T.185, F:T.185 Salt bridges: F:K.184, F:K.184, F:R.212, E:R.366

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fan, C. et al., Crystal structure of the Escherichia coli transcription termination factor Rho. Acta Crystallogr.,Sect.F (2020)

Release Date

2020-09-16

Peptides

Transcription termination factor Rho: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Transcription termination factor Rho

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