- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-6-1-2-1-1-1-mer
- Ligands
- 5 x ADP: ADENOSINE-5'-DIPHOSPHATE
- 6 x MG: MAGNESIUM ION
MG.2: 4 residues within 4Å:- Chain B: K.184, T.185
- Ligands: ADP.1, BEF.3
4 PLIP interactions:1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:T.185, H2O.1, H2O.1, H2O.1
MG.5: 4 residues within 4Å:- Chain C: K.184, T.185
- Ligands: ADP.4, BEF.6
3 PLIP interactions:1 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:T.185, H2O.1, H2O.1
MG.8: 4 residues within 4Å:- Chain D: K.184, T.185
- Ligands: ADP.7, BEF.9
4 PLIP interactions:1 interactions with chain D, 3 Ligand-Water interactions- Metal complexes: D:T.185, H2O.1, H2O.1, H2O.1
MG.12: 4 residues within 4Å:- Chain E: K.184, T.185
- Ligands: BEF.10, ADP.11
2 PLIP interactions:1 interactions with chain E, 1 Ligand-Water interactions- Metal complexes: E:T.185, H2O.1
MG.14: 4 residues within 4Å:- Chain F: K.184, T.185
- Ligands: ADP.13, BEF.15
3 PLIP interactions:1 interactions with chain F, 2 Ligand-Water interactions- Metal complexes: F:T.185, H2O.1, H2O.1
MG.16: 4 residues within 4Å:- Chain L: D.460, D.462, D.464
- Chain O: C.99
5 PLIP interactions:5 interactions with chain L- Metal complexes: L:D.460, L:D.460, L:D.462, L:D.462, L:D.464
- 5 x BEF: BERYLLIUM TRIFLUORIDE ION
BEF.3: 7 residues within 4Å:- Chain A: R.366
- Chain B: K.184, R.212, R.269, L.320
- Ligands: ADP.1, MG.2
No protein-ligand interaction detected (PLIP)BEF.6: 7 residues within 4Å:- Chain B: R.366
- Chain C: P.180, K.181, K.184, R.212
- Ligands: ADP.4, MG.5
No protein-ligand interaction detected (PLIP)BEF.9: 7 residues within 4Å:- Chain C: R.366
- Chain D: P.180, K.184, T.185, R.212
- Ligands: ADP.7, MG.8
No protein-ligand interaction detected (PLIP)BEF.10: 7 residues within 4Å:- Chain D: R.366
- Chain E: P.180, K.181, K.184, R.212
- Ligands: ADP.11, MG.12
No protein-ligand interaction detected (PLIP)BEF.15: 8 residues within 4Å:- Chain E: R.366
- Chain F: P.180, K.181, K.184, R.212, R.269
- Ligands: ADP.13, MG.14
No protein-ligand interaction detected (PLIP)- 2 x ZN: ZINC ION
ZN.17: 5 residues within 4Å:- Chain L: C.70, L.71, C.72, C.85, V.90
3 PLIP interactions:3 interactions with chain L- Metal complexes: L:C.70, L:C.72, L:C.85
ZN.18: 5 residues within 4Å:- Chain L: C.814, C.888, D.889, C.895, C.898
4 PLIP interactions:4 interactions with chain L- Metal complexes: L:C.814, L:C.888, L:C.895, L:C.898
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
- Said, N. et al., Snapshots Along a Factor-Mediated, Elongation Complex-Dependent Path to Transcription Termination. To Be Published
- Release Date
- 2020-11-25
- Peptides
- Transcription termination factor Rho: ABCDEF
Transcription termination/antitermination protein NusA: G
DNA-directed RNA polymerase subunit alpha: HI
DNA-directed RNA polymerase subunit omega: J
DNA-directed RNA polymerase subunit beta: K
DNA-directed RNA polymerase subunit beta': L - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
fB
aC
bD
cE
dF
eG
AH
UI
VJ
WK
XL
Y
SMTL ID : 7add.1
Transcription termination intermediate complex IIIa
Transcription termination factor Rho
Toggle Identical (ABCDEF)Transcription termination/antitermination protein NusA
DNA-directed RNA polymerase subunit alpha
DNA-directed RNA polymerase subunit omega
DNA-directed RNA polymerase subunit beta
DNA-directed RNA polymerase subunit beta'
Related Entries With Identical Sequence
1pv4.1 | 1pvo.1 | 1xpo.1 | 1xpo.2 | 1xpo.3 | 1xpo.4 | 1xpo.5 | 1xpo.6 | 1xpr.1 | 1xpr.2 | 1xpr.3 | 1xpr.4 | 1xpr.5 | 1xpr.6 | 1xpu.1 | 1xpu.2 | 1xpu.3 | 1xpu.4 | 1xpu.5 | 1xpu.6 | 3iyd.1 | 3lu0.1 | 4jk1.1 | 4jk1.2 | 4jk2.1 | 4jk2.2 | 4jkr.1 | 4jkr.2 | 4kmu.1 | 4kmu.2 more...less...4kn4.1 |
4kn4.2 |
4kn7.1 |
4kn7.2 |
4ljz.1 |
4ljz.2 |
4lk0.1 |
4lk0.2 |
4lk1.1 |
4lk1.2 |
4llg.1 |
4llg.2 |
4mex.1 |
4mex.2 |
4mey.1 |
4mey.2 |
4s20.1 |
4s20.2 |
4xsx.1 |
4xsx.2 |
4xsy.1 |
4xsy.2 |
4xsz.1 |
4xsz.2 |
4yfk.1 |
4yfk.2 |
4yfn.1 |
4yfn.2 |
4yfx.1 |
4yfx.2 |
4yg2.1 |
4yg2.2 |
4yln.1 |
4yln.2 |
4yln.3 |
4ylo.1 |
4ylo.2 |
4ylo.3 |
4ylp.1 |
4ylp.2 |
4ylp.3 |
4zh2.1 |
4zh2.2 |
4zh3.1 |
4zh3.2 |
4zh4.1 |
4zh4.2 |
5byh.1 |
5ezk.1 |
5ipl.1 |
5ipm.1 |
5ipn.1 |
5ms0.1 |
5my1.1 |
5nsr.1 |
5nss.1 |
5nwt.1 |
5tbz.1 |
5tbz.2 |
5uac.1 |
5uac.2 |
5uah.1 |
5uah.2 |
5uaj.1 |
5uaj.2 |
5ual.1 |
5ual.2 |
5uaq.1 |
5uaq.2 |
5ui8.1 |
5vsw.1 |
5vsw.2 |
5vt0.1 |
5w1s.1 |
5w1s.2 |
5w1t.1 |
5w1t.2 |
6alf.1 |
6alg.1 |
6alh.1 |
6asx.1 |
6b6h.1 |
6bjs.1 |
6byu.1 |
6byu.2 |
6c6s.1 |
6c6t.1 |
6c6u.1 |
6c9y.1 |
6ca0.1 |
6cux.1 |
6cux.2 |
6flp.1 |
6flq.1 |
6gfw.1 |
6gh5.1 |
6gh6.1 |
6gov.1 |
6jbq.1 |
6jnx.1 |
6k4y.1 |
6kj6.1 |
6ldi.1 |
6n57.1 |
6n58.1 |
6n60.1 |
6n61.1 |
6n62.1 |
6omf.1 |
6oul.1 |
6p18.1 |
6p19.1 |
6p1k.1 |
6pb4.1 |
6pb5.1 |
6pb6.1 |
6pmi.1 |
6pmj.1 |
6psq.1 |
6psr.1 |
6pss.1 |
6pst.1 |
6psu.1 |
6psv.1 |
6psw.1 |
6r9b.1 |
6r9g.1 |
6rh3.1 |
6ri7.1 |
6ri9.1 |
6rin.1 |
6rip.1 |
6tqn.1 |
6tqo.1 |
6utv.1 |
6utw.1 |
6utx.1 |
6uty.1 |
6utz.1 |
6uu0.1 |
6uu1.1 |
6uu2.1 |
6uu3.1 |
6uu4.1 |
6uu5.1 |
6uu6.1 |
6uu7.1 |
6uu8.1 |
6uu9.1 |
6uua.1 |
6uub.1 |
6uuc.1 |
6vjs.1 |
6vjs.2 |
6vu3.7 |
6vyq.9 |
6vyq.10 |
6vyr.7 |
6vyr.9 |
6vyr.10 |
6vys.7 |
6vys.9 |
6vys.10 |
6vyt.6 |
6vyt.8 |
6vyt.9 |
6vyu.6 |
6vyu.8 |
6vyu.9 |
6vyu.11 |
6vyw.6 |
6vyw.8 |
6vyw.9 |
6vyw.11 |
6vyx.6 |
6vyx.8 |
6vyx.9 |
6vyx.11 |
6vyy.6 |
6vyy.8 |
6vyy.9 |
6vyy.11 |
6vyz.6 |
6vyz.8 |
6vyz.9 |
6vyz.11 |
6vz2.6 |
6vz2.8 |
6vz2.9 |
6vz2.11 |
6vz3.6 |
6vz5.6 |
6vz5.8 |
6vz5.9 |
6vz5.11 |
6vzj.7 |
6vzj.8 |
6vzj.9 |
6wa8.1 |
6wmu.1 |
6x6t.7 |
6x6t.9 |
6x6t.10 |
6x6t.12 |
6x7f.7 |
6x7f.9 |
6x7f.10 |
6x7f.12 |
6x7k.7 |
6x7k.9 |
6x7k.10 |
6x7k.12 |
6x9q.7 |
6x9q.9 |
6x9q.10 |
6x9q.12 |
6xas.1 |
6xav.1 |
6xdq.7 |
6xdq.9 |
6xdq.10 |
6xdq.12 |
6xdr.7 |
6xdr.9 |
6xdr.10 |
6xdr.12 |
6xgf.7 |
6xgf.9 |
6xgf.10 |
6xgf.12 |
6xii.7 |
6xii.9 |
6xii.10 |
6xii.12 |
6xij.7 |
6xij.9 |
6xij.10 |
6z9p.1 |
6z9q.1 |
6z9r.1 |
6z9s.1 |
6z9t.1 |
6ztj.53 |
6ztj.54 |
6ztj.55 |
6ztj.57 |
6ztl.1 |
6ztm.1 |
6ztn.49 |
6ztn.50 |
6ztn.51 |
6ztn.53 |
6zto.1 |
6ztp.1 |
6zu1.1 |
7adb.1 |
7adc.1 |
7ade.1 |
7c17.1 |
7c97.1 |
7chw.1 |
7d7c.1 |
7d7d.1 |
7khb.1 |
7khc.1 |
7khe.1 |
7khi.1