SMTL ID : 8pto.1

Structure of Rho pentamer in complex with Rof and ADP

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-5-4-mer

Ligands

3 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 8 residues within 4Å: Chain A: R.366 Chain B: P.180, A.182, G.183, K.184, T.185, M.186, F.355 13 PLIP interactions: 11 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:T.158, B:T.158, B:A.182, B:G.183, B:K.184, B:T.185, B:T.185, B:T.185, B:M.186, A:R.366, A:R.366 Salt bridges: B:K.184 pi-Stacking: B:F.355 ADP.2: 10 residues within 4Å: Chain B: R.366, E.369 Chain C: T.158, K.181, A.182, G.183, K.184, T.185, M.186, F.355 13 PLIP interactions: 10 interactions with chain C, 3 interactions with chain B Hydrogen bonds: C:T.158, C:K.181, C:A.182, C:G.183, C:K.184, C:T.185, C:T.185, C:M.186, B:R.366 Salt bridges: C:K.184, B:R.366, B:K.367 pi-Stacking: C:F.355 ADP.3: 8 residues within 4Å: Chain C: E.369 Chain D: T.158, K.181, G.183, K.184, T.185, M.186, F.355 11 PLIP interactions: 10 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:T.158, D:K.181, D:A.182, D:G.183, D:K.184, D:T.185, D:T.185, D:M.186, C:E.369 pi-Stacking: D:F.355, D:F.355

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Said, N. et al., Sm-like protein Rof inhibits transcription termination factor rho by binding site obstruction and conformational insulation. Nat Commun (2024)

Release Date

2024-04-17

Peptides

Transcription termination factor Rho: ABCDE
Protein rof: FGHI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
b

G
c

H
d

I
a

Transcription termination factor Rho

Protein rof

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