SMTL ID : 6wcf.1

Crystal Structure of ADP ribose phosphatase of NSP3 from SARS-CoV-2 in complex with MES

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.06 Å

Oligo State

monomer

Ligands

2 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.1: 13 residues within 4Å: Chain A: A.38, A.39, N.40, K.44, H.45, G.46, G.47, A.50, S.128, A.129, G.130, I.131, F.132 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:N.40, A:S.128, A:G.130, A:G.130, A:F.132 Water bridges: A:A.38, A:V.49, A:A.129, A:A.129, A:I.131 MES.2: 5 residues within 4Å: Chain A: G.46, G.47, G.51, A.52, K.55 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.46 Water bridges: A:A.52, A:A.52, A:N.54, A:K.55 Salt bridges: A:K.55

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Michalska, K. et al., Crystal structures of SARS-CoV-2 ADP-ribose phosphatase: from the apo form to ligand complexes. Iucrj (2020)

Release Date

2020-04-15

Peptides

Non-structural protein 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Non-structural protein 3

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