SMTL ID : 6wlw.1

The Vo region of human V-ATPase in state 1 (focused refinement)

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-9-1-1-1-1-1-1-mer
Ligands
1 x BGC- GAL- NGA- GAL- SIA: beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose-(1-4)-[N-acetyl-alpha-neuraminic acid-(2-3)]beta-D-galactopyranose-(1-4)-beta-D-glucopyranose
1 x GAL- NGA- GAL- SIA: beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose-(1-4)-[N-acetyl-alpha-neuraminic acid-(2-3)]beta-D-galactopyranose
5 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
1 x NAG- NAG- BMA- MAN- MAN- MAN- GLC- GLC- GLC- MAN- MAN: alpha-D-glucopyranose-(1-2)-alpha-D-glucopyranose-(1-3)-alpha-D-glucopyranose-(1-3)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
10 x WSS: tri(methyl)-[2-[[(2~{R})-2-[(~{Z})-octadec-9-enoyl]oxy-3-[(~{E})-1-oxidanylideneoctadec-9-enoxy]propoxy]-oxidanyl-phosphoryl]oxyethyl]azanium(Non-covalent)(Covalent)
13 x PTY: PHOSPHATIDYLETHANOLAMINE(Non-covalent)
1 x WJS: (2~{S})-2-$l^{4}-azanyl-3-[[(2~{R})-3-octadecanoyloxy-2-oxidanyl-propoxy]-oxidanyl-oxidanylidene-$l^{6}-phosphanyl]oxy-propanoic acid(Non-covalent)
4 x CLR: CHOLESTEROL(Non-covalent)
1 x PSF: 1,2-DICAPROYL-SN-PHOSPHATIDYL-L-SERINE(Non-covalent)
1 x WJP: methyl (3R,6Z,10E,14E)-3,7,11,15,19-pentamethylicosa-6,10,14,18-tetraen-1-yl dihydrogen diphosphate(Non-covalent)
1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Wang, L. et al., Structures of a Complete Human V-ATPase Reveal Mechanisms of Its Assembly. Mol.Cell (2020)
Release Date
2020-11-11
Peptides
V-type proton ATPase 21 kDa proteolipid subunit: A
V-type proton ATPase 16 kDa proteolipid subunit: BCDEFGHIJ
V-type proton ATPase subunit d 1: K
V-type proton ATPase 116 kDa subunit a isoform 1: L
V-type proton ATPase subunit e 1: M
Ribonuclease kappa: N
V-type proton ATPase subunit S1: O
Renin receptor: P
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
0
B
1
C
2
D
3
E
4
F
5
G
6
H
7
I
8
J
9
K
Q
L
R
M
S
N
T
O
U
P
V
Membrane
We predict this structure to be a membrane protein.

V-type proton ATPase 21 kDa proteolipid subunit

V-type proton ATPase 16 kDa proteolipid subunit

Toggle Identical (BCDEFGHIJ)

V-type proton ATPase subunit d 1

V-type proton ATPase 116 kDa subunit a isoform 1

V-type proton ATPase subunit e 1

Ribonuclease kappa

V-type proton ATPase subunit S1

Renin receptor

Related Entries With Identical Sequence

6wm2.1 | 6wm3.1 | 6wm4.1 | 6xbw.1 | 6xby.1 | 7khr.1