SMTL ID : 7u8p.1

Structure of porcine kidney V-ATPase with SidK, Rotary State 1

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-1-1-3-1-3-3-1-1-1-1-1-1-1-9-1-mer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 18 residues within 4Å: Chain C: Q.231, F.252, G.253, C.254, G.255, K.256, T.257, V.258, R.280, E.283, F.445, Q.522, N.523, G.524, Y.525 Chain F: L.392, S.393, R.394 14 PLIP interactions: 13 interactions with chain C, 1 interactions with chain F Hydrogen bonds: C:Q.231, C:G.253, C:C.254, C:G.255, C:K.256, C:T.257, C:V.258, C:Q.522, C:G.524 Salt bridges: C:K.256, C:K.256, C:R.280, F:R.394 pi-Stacking: C:F.445

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, Y.Z. et al., CryoEM of endogenous mammalian V-ATPase interacting with the TLDc protein mEAK-7. Life Sci Alliance (2022)

Release Date

2022-07-06

Peptides

V-type proton ATPase catalytic subunit A: ABC
Vacuolar proton pump subunit B: DEF
V-type proton ATPase subunit C: G
V-type proton ATPase subunit D: H
V-type proton ATPase subunit E 1: IJK
V-type proton ATPase subunit F: L
V-type proton ATPase subunit G: MNO
Bacterial effector protein SidK: PQR
V-type proton ATPase subunit H: S
V-type proton ATPase subunit a: T
V-type proton ATPase 21 kDa proteolipid subunit isoform 1: U
ATPase H+ transporting accessory protein 1: V
V-type proton ATPase subunit: W
V-type proton ATPase subunit: X
Ribonuclease kappa: Y
V-type proton ATPase proteolipid subunit: Z01234567
ATPase H(+)-transporting lysosomal accessory protein 2: 8

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
Q

Q
R

R
S

S
T

T
a

U
b

V
c

W
d

X
e

Y
f

Z
g

0
h

1
i

2
j

3
k

4
l

5
m

6
n

7
o

8
p

Membrane

We predict this structure to be a membrane protein.
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V-type proton ATPase catalytic subunit A

Vacuolar proton pump subunit B

V-type proton ATPase subunit C

V-type proton ATPase subunit D

V-type proton ATPase subunit E 1

V-type proton ATPase subunit F

V-type proton ATPase subunit G

Bacterial effector protein SidK

V-type proton ATPase subunit H

V-type proton ATPase subunit a

V-type proton ATPase 21 kDa proteolipid subunit isoform 1

ATPase H+ transporting accessory protein 1

V-type proton ATPase subunit

V-type proton ATPase subunit

Ribonuclease kappa

V-type proton ATPase proteolipid subunit

ATPase H(+)-transporting lysosomal accessory protein 2

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