SMTL ID : 6wvk.1

Cryo-EM structure of Bacillus subtilis RNA Polymerase in complex with HelD

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-1-1-1-1-1-mer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain D: C.60, C.62, C.75, C.78 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.60, D:C.62, D:C.75, D:C.78 ZN.3: 4 residues within 4Å: Chain D: C.818, C.892, C.899, C.902 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.818, D:C.892, D:C.899, D:C.902

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain D: D.449, D.451, D.453 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:D.449, D:D.451, D:D.453, D:D.453

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Newing, T.P. et al., Molecular basis for RNA polymerase-dependent transcription complex recycling by the helicase-like motor protein HelD. Nat Commun (2020)

Release Date

2020-11-18

Peptides

DNA-directed RNA polymerase subunit alpha: AB
DNA-directed RNA polymerase subunit beta: C
DNA-directed RNA polymerase subunit beta': D
UPF0356 protein YkzG: E
DNA-directed RNA polymerase subunit omega: F
DNA helicase IV: G

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
H

DNA-directed RNA polymerase subunit alpha

DNA-directed RNA polymerase subunit beta

DNA-directed RNA polymerase subunit beta'

UPF0356 protein YkzG

DNA-directed RNA polymerase subunit omega

DNA helicase IV

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