SMTL ID : 8xa8.1

Cryo-EM structure of Bacillus RNAP and HelD complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-1-1-1-1-1-1-mer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain C: C.60, C.62, C.75, C.78, G.79, V.80 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.60, C:C.62, C:C.75, C:C.78 ZN.3: 7 residues within 4Å: Chain C: C.818, R.887, C.892, N.893, T.894, C.899, C.902 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.818, C:C.892, C:C.899, C:C.902

1 x MG: MAGNESIUM ION(Non-functional Binders)

MG.2: 1 residues within 4Å: Chain C: A.795 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, M. et al., A phage encoded sigA-dependent transcription inhibitor also attacks host HelD-mediated defence system. To Be Published

Release Date

2024-12-04

Peptides

DNA-directed RNA polymerase subunit alpha: AB
DNA-directed RNA polymerase subunit beta': C
DNA-directed RNA polymerase subunit epsilon: D
DNA-directed RNA polymerase subunit omega: E
DNA helicase IV: F
DNA-directed RNA polymerase subunit beta: G
DNA-directed RNA polymerase subunit delta: H

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
D

D
E

E
F

F
H

G
C

H
I

DNA-directed RNA polymerase subunit alpha

DNA-directed RNA polymerase subunit beta'

DNA-directed RNA polymerase subunit epsilon

DNA-directed RNA polymerase subunit omega

DNA helicase IV

DNA-directed RNA polymerase subunit beta

DNA-directed RNA polymerase subunit delta

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