SMTL ID : 6x5h.1 (1 other biounit)

Human Alpha-1,6-fucosyltransferase (FUT8) bound to GDP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-dimer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 21 residues within 4Å: Chain A: G.179, Y.180, G.181, C.182, Y.210, H.323, R.325, K.329, A.367, T.368, D.369, I.392, A.396, R.401, G.409, V.410, D.413, S.428, S.429, Q.430, V.431 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:G.179, A:Y.180, A:G.181, A:C.182, A:Y.210, A:Y.210, A:G.409, A:D.413, A:S.428, A:Q.430, A:V.431 Water bridges: A:R.325, A:R.401 Salt bridges: A:R.325, A:K.329, A:D.413

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: P.528, T.529, Y.530, P.531 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.529, A:Y.530 EDO.3: 6 residues within 4Å: Chain A: E.347, K.362, Y.381, P.382, N.383, Y.384 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.362, A:N.383 Water bridges: A:E.347, A:Y.384 EDO.4: 4 residues within 4Å: Chain A: Y.263, K.526, Y.527, P.528 No protein-ligand interaction detected (PLIP) EDO.5: 0 residues within 4Å: (No contacts) 2 PLIP interactions: 2 interactions with chain A Water bridges: A:A.492, A:A.492 EDO.6: 2 residues within 4Å: Chain A: H.443, P.444 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Q.132 EDO.8: 4 residues within 4Å: Chain B: I.468, R.519, K.521, I.522 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.519, B:R.519, B:I.522 EDO.9: 4 residues within 4Å: Chain B: S.428, Q.430, R.433, Y.458 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:S.428, B:Q.430, B:R.433, B:R.433, B:Y.458 EDO.10: 5 residues within 4Å: Chain B: R.325, S.428, S.429, Q.430, V.431 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.428, B:Q.430, B:V.431

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 4 residues within 4Å: Chain A: G.177, C.178, R.209, Y.402 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.177, A:R.209, A:R.209, A:Y.402

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Boruah, B.M. et al., Characterizing human alpha-1,6-fucosyltransferase (FUT8) substrate specificity and structural similarities with related fucosyltransferases. J.Biol.Chem. (2020)

Release Date

2020-10-07

Peptides

Alpha-(1,6)-fucosyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

Alpha-(1,6)-fucosyltransferase

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