SMTL ID : 6x5t.1 (3 other biounits)

Human Alpha-1,6-fucosyltransferase (FUT8) bound to GDP and A3-Asn

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.47 Å

Oligo State

homo-dimer

Ligands

1 x NAG- NAG- BMA- MAN- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-NAG.1: 18 residues within 4Å: Chain A: K.176, G.177, C.178, C.182, I.253, V.254, D.255, E.333, S.428, Q.430, D.454, D.455, Y.458, G.460, A.492, G.493, N.494, H.495 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.492, A:E.333, A:D.454, A:D.455

2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.2: 22 residues within 4Å: Chain A: G.179, Y.180, G.181, C.182, Y.210, H.323, R.325, K.329, E.333, A.367, T.368, D.369, I.392, A.396, R.401, G.409, V.410, D.413, S.428, S.429, Q.430, V.431 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:G.179, A:Y.180, A:G.181, A:C.182, A:Y.210, A:Y.210, A:E.333, A:D.413, A:Q.430, A:V.431 Water bridges: A:R.325 Salt bridges: A:R.325, A:K.329, A:D.413 GDP.4: 21 residues within 4Å: Chain B: G.179, Y.180, G.181, C.182, Y.210, H.323, R.325, K.329, A.367, T.368, D.369, I.392, A.396, R.401, G.409, V.410, D.413, S.428, S.429, Q.430, V.431 14 PLIP interactions: 14 interactions with chain B Hydrogen bonds: B:G.179, B:Y.180, B:G.181, B:C.182, B:Y.210, B:H.323, B:G.409, B:Q.430, B:V.431 Water bridges: B:V.410, B:V.410 Salt bridges: B:R.325, B:K.329, B:D.413

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 1 residues within 4Å: Chain A: W.394 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Boruah, B.M. et al., Characterizing human alpha-1,6-fucosyltransferase (FUT8) substrate specificity and structural similarities with related fucosyltransferases. J.Biol.Chem. (2020)

Release Date

2020-10-07

Peptides

Alpha-(1,6)-fucosyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Alpha-(1,6)-fucosyltransferase

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