SMTL ID : 6xc1.1

Crystal structure of bacteriophage T4 spackle and lysozyme in orthorhombic form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

hetero-1-1-mer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 2 residues within 4Å: Chain A: T.160, N.162 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.160, A:N.162 EDO.5: 3 residues within 4Å: Chain B: K.83, F.85, N.86 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:F.85 Water bridges: B:G.23

3 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.2: 3 residues within 4Å: Chain A: D.20, E.22, Y.24 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.20, A:E.22 IPA.3: 2 residues within 4Å: Chain A: K.118, S.141 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.118 Water bridges: A:N.120 IPA.4: 8 residues within 4Å: Chain A: W.19, D.20, T.21 Chain B: Q.37, E.41, G.71, V.72, M.73 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:V.72, A:T.21 Hydrogen bonds: B:V.72, B:M.73 Water bridges: B:Q.74

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shi, K. et al., Structural basis of superinfection exclusion by bacteriophage T4 Spackle. Commun Biol (2020)

Release Date

2020-12-02

Peptides

Lysozyme: A
Protein spackle: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Lysozyme

Protein spackle

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