SMTL ID : 6ylr.1 (1 other biounit)

Translation initiation factor 4E in complex with bn7GpppG mRNA 5' cap analog

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x OYE: bn7GpppG mRNA 5' cap analog(Non-covalent)

OYE.1: 14 residues within 4Å: Chain A: F.22, D.25, K.26, K.28, T.29, W.30, Q.31, N.33, M.75, W.76, E.77, R.86, R.131, W.140 28 PLIP interactions: 28 interactions with chain A Hydrophobic interactions: A:W.76, A:W.76, A:W.140, A:W.140 Hydrogen bonds: A:K.28, A:K.28, A:Q.31, A:N.33, A:W.76 Water bridges: A:D.64, A:R.86, A:R.131, A:R.131, A:R.131, A:R.131, A:R.131, A:K.136 Salt bridges: A:E.77, A:R.131, A:K.136 pi-Stacking: A:W.30, A:W.30, A:W.30, A:W.76, A:W.76, A:W.76 pi-Cation interactions: A:K.26, A:W.76

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wojcik, R. et al., Novel N7-Arylmethyl Substituted Dinucleotide mRNA 5' cap Analogs: Synthesis and Evaluation as Modulators of Translation. Pharmaceutics (2021)

Release Date

2020-04-15

Peptides

Eukaryotic translation initiation factor 4E: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Eukaryotic translation initiation factor 4E

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