SMTL ID : 6ylt.3 (3 other biounits)

Translation initiation factor 4E in complex with 3-MeBn7GpppG mRNA 5' cap analog

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.67 Å

Oligo State

monomer

Ligands

1 x P3E: [[(2~{R},3~{S},4~{R},5~{R})-5-[2-azanyl-7-[(3-methylphenyl)methyl]-6-oxidanylidene-1~{H}-purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] hydrogen phosphate(Non-covalent)

P3E.1: 10 residues within 4Å: Chain A: D.64, S.66, P.74, M.75, W.76, E.77, V.127, N.129, R.131, W.140 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:P.74, A:V.127, A:V.127, A:W.140 Hydrogen bonds: A:W.76 Salt bridges: A:E.77, A:R.131

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wojcik, R. et al., Novel N7-Arylmethyl Substituted Dinucleotide mRNA 5' cap Analogs: Synthesis and Evaluation as Modulators of Translation. Pharmaceutics (2021)

Release Date

2020-04-29

Peptides

Eukaryotic translation initiation factor 4E: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Eukaryotic translation initiation factor 4E

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