SMTL ID : 6ylv.2 (3 other biounits)

Translation initiation factor 4E in complex with 4-Cl-Bn7GpppG mRNA 5' cap analog

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.66 Å

Oligo State

monomer

Ligands

1 x OYW: 4-Cl-Bn7GpppG mRNA 5' cap analog(Non-covalent)

OYW.1: 12 residues within 4Å: Chain A: W.30, L.34, D.64, S.66, P.74, M.75, W.76, E.77, N.129, R.131, K.136, W.140 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:W.140 Hydrogen bonds: A:W.76, A:N.129 Water bridges: A:R.131, A:R.131, A:R.131, A:K.136, A:K.136 Salt bridges: A:E.77, A:R.131, A:R.131, A:R.131, A:K.136, A:K.136 pi-Stacking: A:W.30, A:W.30, A:W.30, A:W.76 pi-Cation interactions: A:W.30

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: T.90, L.91, Q.95, I.169 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.90, A:Q.95, A:Q.95 Water bridges: A:L.88

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wojcik, R. et al., Novel N7-Arylmethyl Substituted Dinucleotide mRNA 5' cap Analogs: Synthesis and Evaluation as Modulators of Translation. Pharmaceutics (2021)

Release Date

2020-06-10

Peptides

Eukaryotic translation initiation factor 4E: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Eukaryotic translation initiation factor 4E

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