SMTL ID : 6yoo.1

Structure of SAMM50 LIR bound to GABARAPL1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.06 Å

Oligo State

hetero-1-1-mer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: R.46, V.47, P.48 No protein-ligand interaction detected (PLIP) EDO.2: 5 residues within 4Å: Chain A: F.68, R.71, L.76, R.77, P.78 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.71, A:R.71, A:L.76

2 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: H.15, P.16 Chain B: E.2 Ligands: CL.5 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Metal complexes: A:H.15, B:E.2, B:E.2 ZN.4: 4 residues within 4Å: Chain A: K.44, R.46, E.118, K.123 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.118, A:E.118, A:K.123

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 5 residues within 4Å: Chain A: H.15, P.16, Y.19 Chain B: E.2 Ligands: ZN.3 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mouilleron, S. et al., Structure of SAMM50 LIR bound to GABARAPL1. To Be Published

Release Date

2021-04-28

Peptides

Gamma-aminobutyric acid receptor-associated protein-like 1: A
Sorting and assembly machinery component 50 homolog: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Gamma-aminobutyric acid receptor-associated protein-like 1

Sorting and assembly machinery component 50 homolog

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