SMTL ID : 6yr1.1

TetR(D) soaked with Tigecycline I4(1)22

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x T1C: TIGECYCLINE

T1C.1: 19 residues within 4Å: Chain A: H.63, S.66, N.81, F.85, H.99, T.102, P.104, T.111, V.112, Q.115, L.130, I.133, S.137 Chain B: H.150, L.169, L.173, M.176, D.177 Ligands: MG.2 7 PLIP interactions: 5 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:P.104, B:L.173, B:M.176 Hydrogen bonds: A:S.66, A:N.81, A:N.81, A:Q.115 T1C.6: 19 residues within 4Å: Chain A: H.150, L.169, L.173, M.176, D.177 Chain B: H.63, S.66, N.81, F.85, H.99, T.102, P.104, T.111, V.112, Q.115, L.130, I.133, S.137 Ligands: MG.7 7 PLIP interactions: 2 interactions with chain A, 5 interactions with chain B Hydrophobic interactions: A:L.173, A:M.176, B:P.104 Hydrogen bonds: B:S.66, B:N.81, B:N.81, B:Q.115

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: H.99 Chain B: E.146 Ligands: T1C.1 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.99, H2O.1, H2O.1, H2O.1 MG.7: 3 residues within 4Å: Chain A: E.146 Chain B: H.99 Ligands: T1C.6 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:H.99, H2O.2, H2O.2, H2O.2

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 2 residues within 4Å: Chain A: S.1, R.2 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain A: N.4, E.6 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain A: R.2, L.3 Ligand excluded by PLIP CL.8: 2 residues within 4Å: Chain B: S.1, R.2 Ligand excluded by PLIP CL.9: 2 residues within 4Å: Chain B: N.4, E.6 Ligand excluded by PLIP CL.10: 2 residues within 4Å: Chain B: R.2, L.3 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hinrichs, W. et al., TetR(D) soaked with Tigecycline. to be published

Release Date

2021-04-28

Peptides

Tetracycline repressor protein class D: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

B
AAA

Tetracycline repressor protein class D

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