SMTL ID : 6yr2.1

TetR(D) soaked with Tigecycline P4(1)2(1)2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: S.1, R.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.2 SO4.8: 2 residues within 4Å: Chain B: S.1, R.2 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.2

8 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: R.2, L.3 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain A: N.4, R.5, E.6 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: T.26, N.46, K.47 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain A: H.63, N.81, Q.115 Ligand excluded by PLIP CL.9: 2 residues within 4Å: Chain B: R.2, L.3 Ligand excluded by PLIP CL.10: 3 residues within 4Å: Chain B: N.4, R.5, E.6 Ligand excluded by PLIP CL.11: 2 residues within 4Å: Chain B: N.46, K.47 Ligand excluded by PLIP CL.12: 2 residues within 4Å: Chain B: R.170, Q.174 Ligand excluded by PLIP

1 x T1C: TIGECYCLINE

T1C.6: 20 residues within 4Å: Chain A: Q.147, H.150, L.169, A.172, L.173, M.176 Chain B: L.59, H.63, S.66, N.81, F.85, H.99, T.102, P.104, T.111, V.112, Q.115, I.133, S.137 Ligands: MG.7 12 PLIP interactions: 1 interactions with chain A, 11 interactions with chain B Hydrophobic interactions: A:L.173, B:P.104, B:V.112, B:I.133 Hydrogen bonds: B:S.66, B:N.81, B:N.81, B:Q.115 Water bridges: B:T.102, B:T.102, B:Q.108, B:S.137

1 x MG: MAGNESIUM ION(Non-covalent)

MG.7: 3 residues within 4Å: Chain B: H.99, T.102 Ligands: T1C.6 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:H.99, H2O.2, H2O.4, H2O.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hinrichs, W. et al., TetR(D) soaked with Tigecycline. to be published

Release Date

2021-04-28

Peptides

Tetracycline repressor protein class D: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

B
BBB

Tetracycline repressor protein class D

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