SMTL ID : 6yvx.1

HIF prolyl hydroxylase 2 (PHD2/ EGLN1) in complex with bicyclic BB-287

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: H.139, D.141, H.200 Ligands: 2JP.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.139, A:D.141, A:H.200, H2O.1

1 x 2JP: 4-(isoquinolin-3-ylamino)-4-oxobutanoic acid(Non-covalent)

2JP.2: 16 residues within 4Å: Chain A: I.82, M.125, Y.129, Y.136, H.139, D.141, R.148, I.153, Y.155, L.169, H.200, V.202, R.209, A.211, W.215 Ligands: MN.1 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.153, A:V.202 Hydrogen bonds: A:Y.155 Water bridges: A:Y.129, A:Y.129, A:R.209, A:T.213 Salt bridges: A:R.209 pi-Stacking: A:Y.136

1 x BCT: BICARBONATE ION(Non-functional Binders)

BCT.3: 4 residues within 4Å: Chain A: R.138, V.140, R.196, P.199 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.138, A:R.138

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chowdhury, R. et al., Use of cyclic peptides to induce crystallization: case study with prolyl hydroxylase domain 2. Sci Rep (2020)

Release Date

2020-12-30

Peptides

Egl nine homolog 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Egl nine homolog 1

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