SMTL ID : 6z57.1

Crystal structure of haspin (GSG2) in complex with macrocycle ODS2004078

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x Q8W: 10-(2-morpholin-4-ylethyl)-7-oxa-10,13,17,18,21-pentazatetracyclo[12.5.2.12,6.017,20]docosa-1(20),2(22),3,5,14(21),15,18-heptaene(Non-covalent)

Q8W.1: 15 residues within 4Å: Chain A: I.49, E.51, F.54, V.57, A.68, K.70, I.116, F.164, E.165, F.166, G.167, G.168, L.215, I.245, D.246 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.49, A:I.116, A:F.164, A:L.215, A:I.245, A:I.245, A:I.245 Hydrogen bonds: A:G.167 Water bridges: A:I.49, A:Q.173 pi-Stacking: A:F.164

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 5 residues within 4Å: Chain A: E.113, G.114, F.115, V.242, S.243 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.113

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.3: 3 residues within 4Å: Chain A: Y.295, H.296, P.297 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.295 Water bridges: A:R.203, A:H.296, A:H.296 MPD.5: 5 residues within 4Å: Chain A: I.96, E.100, R.254, I.257, V.259 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.96, A:R.254, A:I.257, A:V.259

1 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.4: 5 residues within 4Å: Chain A: E.287, Y.298, L.341, N.342, F.343 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.287, A:L.341 Water bridges: A:E.287

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.6: 4 residues within 4Å: Chain A: Y.226, L.228, K.231, S.233 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.226

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chaikuad, A. et al., Crystal structure of haspin (GSG2) in complex with macrocycle ODS2004078. To Be Published

Release Date

2020-06-03

Peptides

Serine/threonine-protein kinase haspin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serine/threonine-protein kinase haspin

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