SMTL ID : 6z5a.1

Crystal structure of haspin (GSG2) in complex with macrocycle ODS2002941

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

3 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 4 residues within 4Å: Chain A: C.26, H.36, H.122 Ligands: ZN.4 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:H.36 Water bridges: A:H.36, A:S.120, A:S.120, A:S.120, A:S.120 Salt bridges: A:H.36, A:H.122 PO4.2: 8 residues within 4Å: Chain A: Y.19, F.20, Q.21, S.22, M.23, V.121, H.122, C.123 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:F.20, A:Q.21, A:S.22, A:M.23, A:C.123 PO4.3: 2 residues within 4Å: Chain A: T.176, K.177 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.176, A:T.176, A:T.176 Salt bridges: A:K.177

1 x ZN: ZINC ION(Non-covalent)

ZN.4: 4 residues within 4Å: Chain A: C.26, H.36, H.122 Ligands: PO4.1 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.26, A:H.36, A:H.122

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.5: 5 residues within 4Å: Chain A: Y.226, L.228, K.231, S.233, C.351 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.231

1 x NA: SODIUM ION(Non-functional Binders)

NA.6: 3 residues within 4Å: Chain A: E.113, F.115, G.117 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.115, A:G.117

1 x Q8B: N-cyclopentyl-2-[(11,15-dimethyl-10-oxo-8-oxa-2,11,15,19,21,23-hexazatetracyclo[15.6.1.13,7.020,24]pentacosa-1(23),3(25),4,6,17,20(24),21-heptaen-6-yl)oxy]acetamide(Non-covalent)

Q8B.7: 24 residues within 4Å: Chain A: I.49, G.50, E.51, F.54, V.57, A.68, K.70, I.72, I.91, E.94, I.95, S.98, I.116, L.162, F.164, E.165, F.166, G.167, G.168, N.213, L.215, I.245, D.246, Y.247 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:V.57, A:I.72, A:I.91, A:E.94, A:I.95, A:L.162, A:F.164, A:F.164, A:L.215, A:I.245, A:I.245 Hydrogen bonds: A:K.70, A:S.98, A:S.98, A:G.167, A:G.168, A:G.168, A:D.246 Water bridges: A:Y.247, A:T.248

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chaikuad, A. et al., Crystal structure of haspin (GSG2) in complex with macrocycle ODS2002941. To Be Published

Release Date

2020-06-03

Peptides

Serine/threonine-protein kinase haspin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serine/threonine-protein kinase haspin

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