SMTL ID : 6z5c.1

Crystal structure of haspin (GSG2) in complex with macrocycle ODS2004070

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 4 residues within 4Å: Chain A: Y.226, L.228, K.231, S.233 No protein-ligand interaction detected (PLIP)

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 4 residues within 4Å: Chain A: E.113, F.115, G.117, E.165 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.113, A:G.117

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 5 residues within 4Å: Chain A: I.96, E.100, R.254, I.257, V.259 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.100

1 x SIN: SUCCINIC ACID(Non-covalent)

SIN.4: 5 residues within 4Å: Chain A: E.287, Y.298, L.341, N.342, F.343 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.298

1 x PQ5: 7,10-Dioxa-13,17,18,21-tetrazatetracyclo[12.5.2.12,6.017,20]docosa-1(20),2(22),3,5,14(21),15,18-heptaene-5-carboxylic acid(Non-covalent)

PQ5.5: 12 residues within 4Å: Chain A: I.49, F.54, V.57, A.68, K.70, F.164, E.165, G.167, G.168, L.215, I.245, D.246 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:I.49, A:L.215, A:I.245, A:I.245, A:I.245 Hydrogen bonds: A:G.167, A:D.246 Water bridges: A:K.70, A:K.70, A:K.70, A:D.246, A:Y.247, A:T.248 Salt bridges: A:K.70 pi-Stacking: A:F.164

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chaikuad, A. et al., Crystal structure of haspin (GSG2) in complex with macrocycle ODS2004070. To Be Published

Release Date

2020-06-03

Peptides

Serine/threonine-protein kinase haspin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serine/threonine-protein kinase haspin

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