SMTL ID : 6z5e.1

Crystal structure of haspin (GSG2) in complex with macrocycle ODS2004093

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 4 residues within 4Å: Chain A: Y.226, L.228, K.231, S.233 No protein-ligand interaction detected (PLIP)

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 2 residues within 4Å: Chain A: H.36, H.122 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.122 NA.3: 2 residues within 4Å: Chain A: T.316, K.320 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.320 Water bridges: A:F.317

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.4: 5 residues within 4Å: Chain A: I.96, E.100, R.254, I.257, V.259 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.257, A:V.259

1 x SIN: SUCCINIC ACID(Non-covalent)

SIN.5: 5 residues within 4Å: Chain A: E.287, Y.298, L.341, N.342, F.343 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:F.343 Water bridges: A:H.296, A:Y.298, A:S.344

1 x Q8K: 11-cyclopropyl-14-(2-hydroxyethyl)-8,11,14,18,19,22-hexazatetracyclo[13.5.2.12,6.018,21]tricosa-1(21),2(23),3,5,15(22),16,19-heptaen-7-one(Non-covalent)

Q8K.6: 17 residues within 4Å: Chain A: I.49, G.50, E.51, F.54, A.68, K.70, I.116, F.164, E.165, F.166, G.167, G.168, I.169, D.170, L.215, I.245, D.246 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.49, A:A.68, A:I.116, A:I.116, A:F.164, A:F.164, A:L.215, A:I.245, A:I.245 Hydrogen bonds: A:G.167, A:D.170

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chaikuad, A. et al., Crystal structure of haspin (GSG2) in complex with macrocycle ODS2004093. To Be Published

Release Date

2020-06-03

Peptides

Serine/threonine-protein kinase haspin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serine/threonine-protein kinase haspin

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