SMTL ID : 6z7n.1

The atomic structure of HAdV-F41 at pH 7.4

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY 3.77 Å

Oligo State

hetero-10-12-1-1-1-4-2-3-mer

Ligands

1 x PHE- ASN- PRO- VAL- TYR- PRO- TYR: Fiber protein(Non-covalent)

PHE-ASN-PRO-VAL-TYR-PRO-TYR.1: 7 residues within 4Å: Chain W: V.218, T.219, M.223, P.224, L.283, Y.288, E.289 2 PLIP interactions: 2 interactions with chain W Hydrophobic interactions: W:V.218, W:T.219

1 x UNK- UNK- UNK- UNK- UNK- UNK: Unknown(Non-covalent)

UNK-UNK-UNK-UNK-UNK-UNK.2: 10 residues within 4Å: Chain P: K.692, K.719, R.720, T.721, N.733, T.833, Q.834, K.835, D.881 Chain Z: E.6 7 PLIP interactions: 6 interactions with chain P, 1 interactions with chain Z Hydrophobic interactions: P:K.719, P:T.833 Hydrogen bonds: P:K.692, P:N.733, P:K.835, P:D.881, Z:E.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rafie, K. et al., The structure of enteric human adenovirus 41-A leading cause of diarrhea in children. Sci Adv (2021)

Release Date

2021-02-10

Peptides

Pre-protein VI: ABCDEFGHIJ
Hexon protein: KLMNOPQRSTUV
Penton protein: W
Core-capsid bridging protein: X
Pre-hexon-linking protein IIIa: Y
Hexon-interlacing protein: Z012
Pre-hexon-linking protein VIII: 34
Unknown: 567

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
0

B
1

C
2

D
3

E
4

F
5

G
6

H
7

I
8

J
9

K
A

L
B

M
C

N
D

O
E

P
F

Q
G

R
H

S
I

T
J

U
K

V
L

W
M

X
N

Y
O

Z
P

0
Q

1
R

2
S

3
T

4
U

5
W

6
V

7
Z

Pre-protein VI

Hexon protein

Penton protein

Core-capsid bridging protein

Pre-hexon-linking protein IIIa

Hexon-interlacing protein

Pre-hexon-linking protein VIII

Unknown

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