SMTL ID : 6pe0.1

Msp1 (E214Q)-substrate complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-6-1-mer

Ligands

5 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 24 residues within 4Å: Chain B: D.84, I.85, G.86, G.87, L.88, P.127, P.128, G.129, C.130, G.131, K.132, T.133, M.134, Q.186, N.235, Q.261, I.265, L.268, G.293, K.297 Chain C: A.243, R.246, R.247 Ligands: MG.2 16 PLIP interactions: 12 interactions with chain B, 4 interactions with chain C Hydrogen bonds: B:G.86, B:G.129, B:G.131, B:K.132, B:T.133, B:M.134, B:A.233, B:N.235, B:Q.261, B:K.297 Salt bridges: B:K.132, B:K.132, C:R.246, C:R.246, C:R.246, C:R.247 ATP.3: 20 residues within 4Å: Chain C: D.84, I.85, G.86, P.127, P.128, G.129, C.130, G.131, K.132, T.133, M.134, Q.186, N.235, G.293, S.294, K.297 Chain D: D.214, R.246, R.247 Ligands: MG.4 18 PLIP interactions: 14 interactions with chain C, 4 interactions with chain D Hydrogen bonds: C:G.86, C:G.86, C:G.129, C:G.131, C:K.132, C:T.133, C:M.134, C:Q.186, C:N.235, C:N.235, C:K.297, C:K.297, D:R.247 Salt bridges: C:K.132, C:K.132, D:R.246, D:R.246, D:R.246 ATP.5: 24 residues within 4Å: Chain D: D.84, I.85, G.86, L.88, P.128, G.129, C.130, G.131, K.132, T.133, M.134, Q.186, N.235, I.265, L.268, V.269, G.293, S.294, K.297 Chain E: M.210, A.243, R.246, R.247 Ligands: MG.6 19 PLIP interactions: 14 interactions with chain D, 5 interactions with chain E Hydrogen bonds: D:G.86, D:G.86, D:G.129, D:C.130, D:C.130, D:G.131, D:K.132, D:T.133, D:M.134, D:N.235, D:K.297, D:K.297, E:R.246 Salt bridges: D:K.132, D:K.132, E:R.246, E:R.246, E:R.246, E:R.247 ATP.7: 21 residues within 4Å: Chain E: D.84, I.85, G.86, P.128, G.129, C.130, G.131, K.132, T.133, M.134, N.235, I.265, L.268, G.293, S.294, K.297 Chain F: D.214, A.243, R.246, R.247 Ligands: MG.8 17 PLIP interactions: 13 interactions with chain E, 4 interactions with chain F Hydrogen bonds: E:G.86, E:G.86, E:G.129, E:C.130, E:G.131, E:K.132, E:T.133, E:M.134, E:Q.186, E:N.235, E:K.297 Salt bridges: E:K.132, E:K.132, F:R.246, F:R.246, F:R.246, F:R.247 ATP.9: 23 residues within 4Å: Chain A: M.210, D.214, A.243, R.246, R.247 Chain F: D.84, I.85, G.86, P.128, G.129, C.130, G.131, K.132, T.133, M.134, Q.186, N.235, I.265, L.268, G.293, S.294, K.297 Ligands: MG.10 15 PLIP interactions: 11 interactions with chain F, 4 interactions with chain A Hydrogen bonds: F:G.86, F:G.86, F:K.132, F:T.133, F:M.134, F:Q.186, F:N.235, F:N.235, F:N.235, F:K.297 Salt bridges: F:K.132, A:R.246, A:R.246, A:R.246, A:R.247

5 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain B: T.133, Q.186 Ligands: ATP.1 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:T.133 MG.4: 2 residues within 4Å: Chain C: T.133 Ligands: ATP.3 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:T.133 MG.6: 4 residues within 4Å: Chain D: T.133, D.185, Q.186 Ligands: ATP.5 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:T.133 MG.8: 3 residues within 4Å: Chain E: T.133, D.185 Ligands: ATP.7 1 PLIP interactions: 1 interactions with chain E Metal complexes: E:T.133 MG.10: 5 residues within 4Å: Chain A: D.214 Chain F: T.133, D.185, Q.186 Ligands: ATP.9 2 PLIP interactions: 2 interactions with chain F Metal complexes: F:T.133, F:D.185

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, L. et al., Structure of the AAA protein Msp1 reveals mechanism of mislocalized membrane protein extraction. Elife (2020)

Release Date

2020-02-12

Peptides

Membrane-spanning ATPase-like protein: ABCDEF
Unknown E. coli peptide: G

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

B
A

C
B

D
C

E
D

F
E

G
G

Membrane-spanning ATPase-like protein

Unknown E. coli peptide

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