SMTL ID : 6j3y.1

Structure of C2S2-type PSII-FCPII supercomplex from diatom

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-8-mer
Ligands
2 x FE2: FE (II) ION(Non-covalent)
158 x CLA: CHLOROPHYLL A(Non-covalent)(Covalent)
4 x PHO: PHEOPHYTIN A(Non-covalent)
24 x BCR: BETA-CAROTENE(Non-covalent)
6 x SQD: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL(Non-covalent)
2 x BCT: BICARBONATE ION(Non-functional Binders)
8 x LHG: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE(Non-covalent)
14 x LMG: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE(Non-covalent)
2 x OEX: CA-MN4-O5 CLUSTER(Covalent)
8 x DGD: DIGALACTOSYL DIACYL GLYCEROL (DGDG)(Non-covalent)
4 x PL9: 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE(Covalent)(Non-covalent)
4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
48 x A86: (3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'-yl acetate(Non-covalent)(Covalent)
2 x LMU: DODECYL-ALPHA-D-MALTOSIDE(Covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Nagao, R. et al., Structural basis for energy harvesting and dissipation in a diatom PSII-FCPII supercomplex. Nat.Plants (2019)
Release Date
2019-08-07
Peptides
Photosystem II reaction center protein D1: AY
Photosystem II chlorophyll protein CP47: BZ
Photosystem II chlorophyll protein CP43: C0
Photosystem II reaction center protein D2: D1
Cytochrome b559 subunit alpha: E2
Cytochrome b559 subunit beta: F3
Photosystem II reaction center protein H: G4
Photosystem II reaction center protein I: H5
Photosystem II reaction center protein J: I6
Photosystem II reaction center protein K: J7
Photosystem II reaction center protein L: K8
Photosystem II reaction center protein M: L9
Extrinsic protein in photosystem II: Ma
Photosystem II reaction center protein T: Nb
Extrinsic protein in photosystem II: Oc
Cytochrome c-550: Pd
Photosystem II reaction center protein Ycf12: Qe
Photosystem II reaction center X protein: Rf
Photosystem II reaction center protein Z: Sg
Extrinsic protein in photosystem II: Th
Photosystem II reaction center protein W: Ui
Unknown protein 0: Vj
Unknown protein 1: Wk
Unknown protein 2: Xl
Fucoxanthin chlorophyll a/c-binding protein Lhcf1, FCP1: mnopqrst
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
Y
a
B
B
Z
b
C
C
0
c
D
D
1
d
E
E
2
e
F
F
3
f
G
H
4
h
H
I
5
i
I
J
6
j
J
K
7
k
K
L
8
l
L
M
9
m
M
O
a
o
N
T
b
t
O
U
c
u
P
V
d
v
Q
Y
e
y
R
X
f
x
S
Z
g
z
T
Q
h
q
U
W
i
w
V
0
j
5
W
1
k
6
X
2
l
7
m
11
n
12
o
13
p
14
q
31
r
32
s
33
t
34
Membrane
We predict this structure to be a membrane protein.

Photosystem II reaction center protein D1

Toggle Identical (AY)

Photosystem II chlorophyll protein CP47

Toggle Identical (BZ)

Photosystem II chlorophyll protein CP43

Toggle Identical (C0)

Photosystem II reaction center protein D2

Toggle Identical (D1)

Cytochrome b559 subunit alpha

Toggle Identical (E2)

Cytochrome b559 subunit beta

Toggle Identical (F3)

Photosystem II reaction center protein H

Toggle Identical (G4)

Photosystem II reaction center protein I

Toggle Identical (H5)

Photosystem II reaction center protein J

Toggle Identical (I6)

Photosystem II reaction center protein K

Toggle Identical (J7)

Photosystem II reaction center protein L

Toggle Identical (K8)

Photosystem II reaction center protein M

Toggle Identical (L9)

Extrinsic protein in photosystem II

Toggle Identical (Ma)

Photosystem II reaction center protein T

Toggle Identical (Nb)

Extrinsic protein in photosystem II

Toggle Identical (Oc)

Cytochrome c-550

Toggle Identical (Pd)

Photosystem II reaction center protein Ycf12

Toggle Identical (Qe)

Photosystem II reaction center X protein

Toggle Identical (Rf)

Photosystem II reaction center protein Z

Toggle Identical (Sg)

Extrinsic protein in photosystem II

Toggle Identical (Th)

Photosystem II reaction center protein W

Toggle Identical (Ui)

Unknown protein 0

Toggle Identical (Vj)

Unknown protein 1

Toggle Identical (Wk)

Unknown protein 2

Toggle Identical (Xl)

Fucoxanthin chlorophyll a/c-binding protein Lhcf1, FCP1

Toggle Identical (mnopqrst)

Related Entries With Identical Sequence

1pyh.1 | 1z56.1 | 2jes.1 | 3mk7.1 | 3mk7.2 | 3mk7.3 | 3mk7.4 | 4cc8.1 | 4uq8.1 | 4v9j.1 | 4v9j.2 | 4v9k.1 | 4v9k.2 | 4v9l.1 | 4v9l.2 | 4v9m.1 | 4v9m.2 | 4w29.1 | 4w29.2 | 4wz7.1 | 5ceh.1 | 5cod.1 | 5cod.2 | 5cod.3 | 5cod.4 | 5cod.5 | 5cod.6 | 5fp2.1 | 5fp2.2 | 5k4l.2  more...