SMTL ID : 6zbb.1

bovine ATP synthase Fo domain

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-8-1-1-1-1-1-1-1-1-mer

Ligands

3 x CDL: CARDIOLIPIN(Non-covalent)

CDL.1: 32 residues within 4Å: Chain A: L.18, I.22, I.23, L.26, K.27, K.30 Chain J: L.19, L.22, I.23, L.25, F.26, S.28, L.29, P.32, T.33 Chain N: A.34, F.37, Q.38, G.40, Y.41, Y.42, A.65, Y.66, L.69 Chain P: L.5, I.6, K.8, V.9, W.10, Y.17 Ligands: CDL.2, LHG.4 18 PLIP interactions: 4 interactions with chain A, 5 interactions with chain J, 5 interactions with chain N, 4 interactions with chain P Hydrophobic interactions: A:L.18, A:I.22, A:I.23, J:L.22, J:I.23, J:L.25, J:L.29, N:F.37, N:Y.41, N:L.69, P:L.5, P:V.9 Salt bridges: A:K.27, P:K.8, P:K.8 Hydrogen bonds: J:T.33, N:Y.41, N:Y.42 CDL.2: 35 residues within 4Å: Chain J: L.29, L.30, P.32, F.42 Chain K: L.16, I.17, P.18, E.20, F.21, F.24, I.64 Chain N: L.12, G.40, Y.41, R.43, Y.44, Y.45, K.47, Y.48, V.49, G.58, L.59, M.61, V.62, A.64, A.65, V.67, F.68 Chain O: K.70, L.73, L.77 Ligands: CDL.1, CDL.3, LHG.4, LHG.5 18 PLIP interactions: 4 interactions with chain K, 2 interactions with chain O, 1 interactions with chain J, 11 interactions with chain N Hydrophobic interactions: K:I.17, K:F.21, K:F.24, K:I.64, O:L.73, J:L.29, N:Y.41, N:Y.41, N:Y.44, N:Y.44, N:V.62, N:F.68 Salt bridges: O:K.70, N:R.43, N:R.43, N:K.47, N:K.47 Hydrogen bonds: N:R.43 CDL.3: 37 residues within 4Å: Chain J: L.30, F.31, R.41, F.42, L.45, Q.46, W.48, M.49, L.52, V.53, S.81, L.84, L.85, L.88, F.204, M.208 Chain K: F.14, G.15, L.16, I.64, F.66, L.67, V.68, I.70, V.71, K.72, G.75, A.76, V.78, G.79 Chain N: G.54, S.55, I.56, L.59, S.60, L.63 Ligands: CDL.2 14 PLIP interactions: 5 interactions with chain J, 3 interactions with chain N, 6 interactions with chain K Hydrophobic interactions: J:F.42, J:L.45, J:L.85, N:I.56, K:I.64, K:L.67, K:L.67, K:V.68, K:V.78 Hydrogen bonds: J:R.41, N:S.55, N:I.56 Salt bridges: J:R.41, K:K.72

2 x LHG: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE(Non-covalent)

LHG.4: 11 residues within 4Å: Chain N: K.10, L.11, L.12, W.22, R.39, R.43, F.68 Chain O: L.73 Ligands: CDL.1, CDL.2, LHG.5 4 PLIP interactions: 4 interactions with chain N Hydrogen bonds: N:K.10, N:L.11, N:L.12 Salt bridges: N:R.43 LHG.5: 24 residues within 4Å: Chain J: P.89, H.90 Chain K: L.16, I.17, G.38, L.41, I.42, Y.44, L.45, I.50, Y.51, T.57, A.60, I.64 Chain N: V.67, F.68, Y.71, C.72, Y.75, K.79, R.82, H.87 Ligands: CDL.2, LHG.4 7 PLIP interactions: 5 interactions with chain N, 2 interactions with chain K Hydrophobic interactions: N:F.68, N:Y.75, K:L.41, K:I.50 Salt bridges: N:K.76, N:K.79, N:R.82

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Spikes, T.E. et al., Structure of the dimeric ATP synthase from bovine mitochondria. Proc.Natl.Acad.Sci.USA (2020)

Release Date

2020-09-09

Peptides

ATP synthase protein 8: A
ATP synthase F(0) complex subunit C1, mitochondrial: BCDEFGHI
ATP synthase subunit a: J
ATP synthase F(0) complex subunit B1, mitochondrial: K
ATP synthase subunit d, mitochondrial: L
ATP synthase subunit e, mitochondrial: M
ATP synthase subunit f, mitochondrial: N
ATP synthase subunit g, mitochondrial: O
ATP synthase subunit ATP5MPL, mitochondrial: P
ATP synthase membrane subunit DAPIT, mitochondrial: Q

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
8

B
K

C
L

D
M

E
N

F
O

G
P

H
Q

I
R

J
a

K
b

L
d

M
e

N
f

O
g

P
j

Q
k

Membrane

We predict this structure to be a membrane protein.
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ATP synthase protein 8

ATP synthase F(0) complex subunit C1, mitochondrial

ATP synthase subunit a

ATP synthase F(0) complex subunit B1, mitochondrial

ATP synthase subunit d, mitochondrial

ATP synthase subunit e, mitochondrial

ATP synthase subunit f, mitochondrial

ATP synthase subunit g, mitochondrial

ATP synthase subunit ATP5MPL, mitochondrial

ATP synthase membrane subunit DAPIT, mitochondrial

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