- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-3-3-1-1-1-1-8-1-1-1-1-1-1-1-1-1-1-1-mer
- Ligands
- 3 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 5 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 2 residues within 4Å:- Chain A: T.176
- Ligands: ATP.1
4 PLIP interactions:1 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:T.176, H2O.1, H2O.1, H2O.1
MG.4: 3 residues within 4Å:- Chain B: T.176, Q.208
- Ligands: ATP.3
4 PLIP interactions:1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:T.176, H2O.1, H2O.1, H2O.1
MG.6: 3 residues within 4Å:- Chain C: T.176, D.269
- Ligands: ATP.5
4 PLIP interactions:1 interactions with chain C, 3 Ligand-Water interactions- Metal complexes: C:T.176, H2O.1, H2O.1, H2O.1
MG.8: 4 residues within 4Å:- Chain D: T.167, R.193, E.196
- Ligands: ADP.7
5 PLIP interactions:1 interactions with chain D, 4 Ligand-Water interactions- Metal complexes: D:T.167, H2O.1, H2O.1, H2O.1, H2O.1
MG.11: 5 residues within 4Å:- Chain F: T.167, E.192, R.193, E.196
- Ligands: ADP.10
5 PLIP interactions:1 interactions with chain F, 4 Ligand-Water interactions- Metal complexes: F:T.167, H2O.1, H2O.1, H2O.1, H2O.1
- 3 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.7: 16 residues within 4Å:- Chain C: V.371, R.373
- Chain D: A.162, G.163, V.164, G.165, K.166, T.167, V.168, Y.349, P.350, F.422, A.425, F.428, T.429
- Ligands: MG.8
13 PLIP interactions:11 interactions with chain D, 2 interactions with chain C- Hydrogen bonds: D:G.163, D:V.164, D:G.165, D:K.166, D:T.167, D:T.167, D:V.168
- Water bridges: D:R.193
- Salt bridges: D:K.166, C:R.373, C:R.373
- pi-Stacking: D:Y.349, D:Y.349
ADP.9: 15 residues within 4Å:- Chain E: A.162, G.163, V.164, G.165, K.166, T.167, V.168, Y.349, P.350, Q.420, P.421, F.422, A.425, F.428, T.429
9 PLIP interactions:9 interactions with chain E- Hydrogen bonds: E:G.163, E:V.164, E:G.165, E:K.166, E:T.167, E:T.167, E:V.168
- pi-Stacking: E:Y.349, E:Y.349
ADP.10: 19 residues within 4Å:- Chain B: V.371, R.373
- Chain F: A.162, G.163, V.164, G.165, K.166, T.167, V.168, R.193, Y.349, P.350, Q.420, F.422, A.425, F.428, T.429, M.463
- Ligands: MG.11
16 PLIP interactions:13 interactions with chain F, 3 interactions with chain B- Hydrogen bonds: F:G.163, F:V.164, F:G.165, F:K.166, F:T.167, F:V.168, F:T.429
- Water bridges: F:R.193, F:R.193, F:R.193, B:R.373
- Salt bridges: F:K.166, B:R.373, B:R.373
- pi-Stacking: F:Y.349, F:Y.349
- 3 x CDL: CARDIOLIPIN(Non-covalent)
CDL.12: 33 residues within 4Å:- Chain T: L.18, I.22, I.23, L.26, K.27, K.30
- Chain U: L.19, L.22, I.23, L.25, F.26, S.28, L.29, P.32, T.33
- Chain W: A.34, F.37, Q.38, G.40, Y.41, Y.42, A.65, Y.66, F.68, L.69
- Chain Y: L.5, I.6, K.8, V.9, W.10, Y.17
- Ligands: CDL.13, LHG.14
17 PLIP interactions:6 interactions with chain U, 3 interactions with chain T, 5 interactions with chain W, 3 interactions with chain Y- Hydrophobic interactions: U:L.22, U:I.23, U:L.25, U:F.26, U:L.29, T:I.22, T:I.23, W:Y.41, W:Y.41, Y:V.9
- Hydrogen bonds: U:T.33, W:Q.38, W:Y.41, W:Y.42
- Salt bridges: T:K.27, Y:K.8, Y:K.8
CDL.13: 35 residues within 4Å:- Chain U: L.29, L.30, P.32
- Chain W: L.12, G.40, Y.41, R.43, Y.44, Y.45, K.47, Y.48, V.49, G.58, L.59, M.61, V.62, A.64, A.65, V.67, F.68
- Chain X: K.70, L.73, L.77
- Chain Z: L.16, I.17, P.18, E.20, F.21, F.24, L.37, I.64
- Ligands: CDL.12, LHG.14, CDL.15, LHG.16
14 PLIP interactions:1 interactions with chain X, 11 interactions with chain W, 1 interactions with chain U, 1 interactions with chain Z- Salt bridges: X:K.70, W:R.43, W:R.43, W:K.47
- Hydrophobic interactions: W:Y.41, W:Y.41, W:Y.44, W:Y.44, W:Y.44, W:F.68, U:L.29, Z:F.21
- Hydrogen bonds: W:R.43, W:R.43
CDL.15: 36 residues within 4Å:- Chain U: L.30, F.31, R.41, F.42, L.45, Q.46, M.49, L.52, V.53, S.81, L.84, L.85, L.88, F.204, M.208
- Chain W: G.54, S.55, I.56, L.59, S.60, L.63
- Chain Z: F.14, G.15, L.16, I.64, F.66, L.67, V.68, I.70, V.71, K.72, G.75, A.76, V.78, G.79
- Ligands: CDL.13
13 PLIP interactions:4 interactions with chain U, 6 interactions with chain Z, 3 interactions with chain W- Hydrophobic interactions: U:F.31, U:F.42, U:L.45, Z:F.14, Z:I.64, Z:L.67, Z:V.78, W:I.56, W:L.59
- Hydrogen bonds: U:R.41, W:I.56
- Salt bridges: Z:K.72, Z:K.72
- 2 x LHG: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE(Non-covalent)
LHG.14: 9 residues within 4Å:- Chain W: K.10, L.11, L.12, R.39, R.43
- Chain X: L.73
- Ligands: CDL.12, CDL.13, LHG.16
7 PLIP interactions:7 interactions with chain W- Hydrogen bonds: W:R.39, W:R.39, W:R.43
- Salt bridges: W:K.10, W:K.10, W:K.10, W:R.43
LHG.16: 20 residues within 4Å:- Chain U: P.89, H.90
- Chain W: V.67, F.68, Y.71, C.72, Y.75, K.79, R.82
- Chain Z: G.38, L.41, I.42, Y.44, L.45, K.48, I.50, Y.51, A.60
- Ligands: CDL.13, LHG.14
5 PLIP interactions:3 interactions with chain W, 2 interactions with chain Z- Hydrophobic interactions: W:F.68, W:Y.75
- Salt bridges: W:K.79, Z:K.48, Z:K.48
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Spikes, T.E. et al., Structure of the dimeric ATP synthase from bovine mitochondria. Proc.Natl.Acad.Sci.USA (2020)
- Release Date
- 2020-09-09
- Peptides
- ATP synthase subunit alpha, mitochondrial: ABC
ATP synthase subunit beta, mitochondrial: DEF
ATP synthase subunit gamma, mitochondrial: G
ATP synthase subunit delta, mitochondrial: H
ATP synthase subunit epsilon, mitochondrial: I
ATPase inhibitor, mitochondrial: J
ATP synthase F(0) complex subunit C2, mitochondrial: KLMNOPQR
ATP synthase subunit O, mitochondrial: S
ATP synthase protein 8: T
ATP synthase subunit a: U
ATP synthase subunit d, mitochondrial: V
ATP synthase subunit f, mitochondrial: W
ATP synthase subunit g, mitochondrial: X
ATP synthase subunit ATP5MPL, mitochondrial: Y
ATP synthase F(0) complex subunit B1, mitochondrial: Z
ATP synthase-coupling factor 6, mitochondrial: 0
ATP synthase membrane subunit DAPIT, mitochondrial: 1
ATP synthase subunit e, mitochondrial: 2 - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
JK
KL
LM
MN
NO
OP
PQ
QR
RS
ST
8U
aV
dW
fX
gY
jZ
b0
h1
k2
e - Membrane
-
We predict this structure to be a membrane protein.
SMTL ID : 6zqm.1
bovine ATP synthase monomer state 2 (combined)
ATP synthase subunit alpha, mitochondrial
ATP synthase subunit beta, mitochondrial
Toggle Identical (EF)ATP synthase subunit gamma, mitochondrial
ATP synthase subunit delta, mitochondrial
ATP synthase subunit epsilon, mitochondrial
ATPase inhibitor, mitochondrial
ATP synthase F(0) complex subunit C2, mitochondrial
Toggle Identical (KMNOPQR)ATP synthase subunit O, mitochondrial
ATP synthase protein 8
ATP synthase subunit a
ATP synthase subunit d, mitochondrial
ATP synthase subunit f, mitochondrial
ATP synthase subunit g, mitochondrial
ATP synthase subunit ATP5MPL, mitochondrial
ATP synthase F(0) complex subunit B1, mitochondrial
ATP synthase-coupling factor 6, mitochondrial
ATP synthase membrane subunit DAPIT, mitochondrial
ATP synthase subunit e, mitochondrial
Related Entries With Identical Sequence
1bmf.1 | 1cow.1 | 1e1q.1 | 1e1r.1 | 1e79.1 | 1efr.1 | 1h8e.1 | 1h8h.1 | 1ohh.1 | 1vzs.1 | 1w0j.1 | 1w0k.1 | 2ck3.1 | 2cly.1 | 2cly.2 | 2jdi.1 | 2jiz.1 | 2jiz.2 | 2jj1.1 | 2jj1.2 | 2jj2.1 | 2jj2.2 | 2v7q.1 | 2wss.1 | 2wss.2 | 4asu.1 | 4tsf.1 | 4tt3.1 | 4yxw.1 | 4z1m.1 more...less...5ara.1 | 5are.1 | 5arh.1 | 5ari.1 | 5fij.1 | 5fik.1 | 5fil.1 | 5lqx.1 | 5lqy.1 | 5lqz.1 | 6tt7.1 | 6yy0.1 | 6z1r.1 | 6z1u.1 | 6za9.1 | 6zbb.1 | 6zg7.1 | 6zg8.1 | 6zik.1 | 6ziq.1 | 6zit.1 | 6ziu.1 | 6zmr.1 | 6zna.2 | 6zna.3 | 6zna.4 | 6zna.5 | 6zna.6 | 6zna.7 | 6zna.8 | 6zna.9 | 6zna.19 | 6zna.20 | 6zna.21 | 6zna.22 | 6zna.23 | 6zna.24 | 6zna.25 | 6zna.26 | 6zna.36 | 6zna.37 | 6zna.38 | 6zna.39 | 6zna.40 | 6zna.41 | 6zna.42 | 6zna.43 | 6zna.52 | 6zna.53 | 6zna.54 | 6zna.55 | 6zna.56 | 6zna.57 | 6zna.58 | 6zna.59 | 6zpo.1 | 6zqn.1 | 7ajb.1 | 7ajc.1 | 7ajd.1 | 7aje.1 | 7ajf.1 | 7ajg.1 | 7ajh.1 | 7aji.1 | 7ajj.1 | 8h9f.1 | 8h9j.1 | 8h9m.1 | 8h9q.1 | 8h9s.1 | 8h9t.1 | 8h9u.1 | 8h9v.1 | 8khf.1 | 8ki3.1