SMTL ID : 6zdg.1

Association of three complexes of largely structurally disordered Spike ectodomain with bound EY6A Fab

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-3-mer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: G.7, N.11, V.35 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:V.35 NAG.2: 3 residues within 4Å: Chain D: G.7, N.11, V.35 1 PLIP interactions: 1 interactions with chain D Hydrophobic interactions: D:V.35 NAG.3: 3 residues within 4Å: Chain G: G.7, N.11, V.35 1 PLIP interactions: 1 interactions with chain G Hydrophobic interactions: G:V.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, D. et al., Structural basis for the neutralization of SARS-CoV-2 by an antibody from a convalescent patient. Nat.Struct.Mol.Biol. (2020)

Release Date

2020-07-29

Peptides

Spike protein S1: ADG
EY6A heavy chain: BEH
EY6A light chain: CFI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

D
A

G
D

B
H

E
B

H
F

C
L

F
C

I
G

Spike protein S1

EY6A heavy chain

EY6A light chain

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