- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-2-1-mer
- Ligands
- 6 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)
FMN.2: 23 residues within 4Å:- Chain A: G.110, R.111, G.112, G.113, A.114, K.121, N.139, D.141, E.142, E.144, D.150, Y.227, G.230, E.231, E.232, V.265, T.266, N.267, T.270, T.374, A.449, L.450, A.453
17 PLIP interactions:17 interactions with chain A- Hydrophobic interactions: A:Y.227, A:E.231, A:E.231, A:A.449, A:A.453
- Hydrogen bonds: A:R.111, A:G.112, A:G.113, A:A.114, A:G.115, A:K.121, A:N.139, A:E.144, A:D.150, A:V.265, A:N.267
- Salt bridges: A:K.121
- 2 x T7X: Phosphatidylinositol(Non-covalent)
T7X.3: 14 residues within 4Å:- Chain B: W.56, D.462, R.463, N.464, L.467, M.471, F.475
- Chain L: L.12, T.16, Q.17, P.32, H.35, M.39
- Ligands: CDL.4
12 PLIP interactions:8 interactions with chain B, 4 interactions with chain L- Hydrophobic interactions: B:L.467, B:M.471, B:F.475, L:L.12, L:L.12, L:T.16, L:Q.17
- Hydrogen bonds: B:R.463, B:R.463, B:N.464, B:N.464
- Salt bridges: B:R.463
T7X.15: 11 residues within 4Å:- Chain 3: R.82, A.85, V.86, G.89
- Chain 6: L.25, L.29
- Chain Z: T.46, Y.49, L.50, I.53
- Ligands: CDL.4
3 PLIP interactions:1 interactions with chain Z, 1 interactions with chain 3, 1 interactions with chain 6- Hydrogen bonds: Z:Y.49
- Salt bridges: 3:R.82
- Hydrophobic interactions: 6:L.29
- 1 x CDL: CARDIOLIPIN(Non-covalent)
CDL.4: 18 residues within 4Å:- Chain 3: I.93
- Chain 5: F.13
- Chain 6: A.21, L.22, L.25, G.26
- Chain B: W.56, R.463
- Chain L: R.30, H.31, P.32, E.34, H.35
- Chain Z: T.46, V.47, L.50
- Ligands: T7X.3, T7X.15
8 PLIP interactions:1 interactions with chain 5, 1 interactions with chain 6, 1 interactions with chain L, 3 interactions with chain Z, 1 interactions with chain B, 1 interactions with chain 3- Hydrophobic interactions: 5:F.13, 6:L.22, Z:T.46, Z:V.47, Z:L.50, 3:I.93
- Salt bridges: L:R.30, B:R.463
- 1 x PEV: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE(Non-covalent)
PEV.5: 17 residues within 4Å:- Chain E: F.191, I.192, F.203, V.283, F.287, Y.290, L.298, V.302, F.303, L.306
- Chain J: V.16
- Chain N: R.197, Q.201
- Chain X: T.70, L.71, L.73, M.76
14 PLIP interactions:9 interactions with chain E, 2 interactions with chain X, 3 interactions with chain N- Hydrophobic interactions: E:F.191, E:I.192, E:I.192, E:F.203, E:V.283, E:F.287, E:Y.290, E:L.298, E:F.303, X:L.73, X:L.73
- Salt bridges: N:R.197, N:R.197, N:R.197
- 2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
FES.8: 9 residues within 4Å:- Chain O: R.104, F.105, C.106, Y.107, C.117, R.118, C.120, A.132, C.134
4 PLIP interactions:4 interactions with chain O,- Metal complexes: O:C.106, O:C.117, O:C.117, O:C.134
FES.10: 9 residues within 4Å:- Chain R: C.130, P.134, C.135, C.171, M.172, G.173, C.174, C.175, M.180
5 PLIP interactions:5 interactions with chain R,- Metal complexes: R:C.130, R:C.135, R:C.171, R:C.174, R:C.175
- 1 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
NDP.9: 22 residues within 4Å:- Chain P: G.75, T.77, G.78, F.79, L.80, R.100, P.125, L.144, I.145, G.146, R.147, F.154, A.159, V.183, C.185, K.200, P.219, A.220, T.221, M.222, R.228, I.229
14 PLIP interactions:14 interactions with chain P- Hydrogen bonds: P:G.75, P:T.77, P:T.77, P:T.77, P:F.79, P:L.80, P:L.144, P:G.146, P:M.222
- Salt bridges: P:R.100, P:R.147, P:R.147, P:R.228
- pi-Cation interactions: P:R.100
- 2 x ZN: ZINC ION(Non-covalent)
ZN.11: 4 residues within 4Å:- Chain T: C.72, H.82, C.97, C.100
3 PLIP interactions:3 interactions with chain T- Metal complexes: T:C.72, T:H.82, T:C.97
ZN.16: 3 residues within 4Å:- Chain 5: H.107
- Chain 6: H.130
- Ligands: BCT.17
2 PLIP interactions:1 interactions with chain 5, 1 interactions with chain 6- Metal complexes: 5:H.107, 6:H.130
- 1 x BCT: BICARBONATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Soufari, H. et al., Specific features and assembly of the plant mitochondrial complex I revealed by cryo-EM. Nat Commun (2020)
- Release Date
- 2020-10-28
- Peptides
- 51kDa: A
Nad2m: B
Nad3m: C
Nad6m: D
Nad1m: E
Nad4Lm: F
PGIV: G
B16.6: H
MWFE: I
B9: J
B14.5a: K
B14.5b: L
15kDa: M
Nad7m: N
75kDa: O
39kDa: P
Nad9m: Q
24kDa: R
18kDa: S
13kDa: T
B13: U
B17.2: V
PSST: W
TYKY: X
B14: Y
MNLL: Z
B8: 0
ACPM1: 1
Unk1: 2
P2: 3
CAL1: 4
CA1: 56
GLDH: 7 - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
IC
JD
NE
HF
KG
YH
ZI
VJ
WK
SL
iM
jN
GO
CP
TQ
FR
BS
OT
PU
RV
UW
EX
DY
XZ
c0
Q1
k2
r3
n4
o5
q6
p7
z - Membrane
-
We predict this structure to be a membrane protein.
SMTL ID : 7a24.1
Assembly intermediate of the plant mitochondrial complex I
51kDa
Nad2m
Nad3m
Nad6m
Nad1m
Nad4Lm
PGIV
B16.6
MWFE
B9
B14.5a
B14.5b
15kDa
Nad7m
75kDa
39kDa
Nad9m
24kDa
18kDa
13kDa
B13
B17.2
PSST
TYKY
B14
MNLL
B8
ACPM1
Unk1
P2
CAL1
CA1
GLDH
Related Entries With Identical Sequence
5fn3.1 | 5oa1.1 | 6oab.1 | 6qs4.1 | 6rn2.1 | 6rn4.1 | 7a23.1 | 7aqq.1 | 7aqr.1 | 7aqw.1 | 7ar7.1 | 7ar8.1 | 7arb.1 | 8bed.1 | 8bee.1 | 8bef.1 | 8beh.1 | 8bpx.1 | 8bpx.2 | 8bpx.3 | 8bpx.5 | 8bpx.6 | 8bpx.7 | 8bpx.14 | 8bpx.16 | 8bpx.17 | 8bpx.18 | 8bpx.19 | 8bpx.20 | 8bpx.22 more...less...8bpx.23 | 8bpx.24 | 8bpx.26 | 8bpx.27 | 8bpx.28 | 8bpx.30 | 8bpx.31 | 8bpx.32 | 8bpx.42 | 8bpx.44 | 8bpx.47 | 8bq5.1 | 8bq5.2 | 8bq5.3 | 8bq5.5 | 8bq5.6 | 8bq5.7 | 8bq5.14 | 8bq5.16 | 8bq5.17 | 8bq5.18 | 8bq5.19 | 8bq5.20 | 8bq5.22 | 8bq5.23 | 8bq5.24 | 8bq5.26 | 8bq5.27 | 8bq5.28 | 8bq5.30 | 8bq5.31 | 8bq5.32 | 8bq5.42 | 8bq5.44 | 8bq5.47 | 8bq6.1 | 8bq6.2 | 8bq6.3 | 8bq6.5 | 8bq6.6 | 8bq6.7 | 8bq6.14 | 8bq6.16 | 8bq6.17 | 8bq6.18 | 8bq6.19 | 8bq6.20 | 8bq6.22 | 8bq6.23 | 8bq6.24 | 8bq6.26 | 8bq6.27 | 8bq6.28 | 8bq6.30 | 8bq6.31 | 8bq6.32 | 8bq6.42 | 8bq6.44 | 8bq6.47