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SMTL ID : 7arb.1

Cryo-EM structure of Arabidopsis thaliana Complex-I (complete composition)

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
6 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
3 x PTY: PHOSPHATIDYLETHANOLAMINE(Non-covalent)
2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)
1 x UQ9: Ubiquinone-9(Non-covalent)
1 x LMN: Lauryl Maltose Neopentyl Glycol(Non-covalent)
1 x FE: FE (III) ION(Non-covalent)
1 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
2 x ZN: ZINC ION(Non-covalent)
2 x 8Q1: S-[2-({N-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] dodecanethioate(Non-covalent)
2 x PC7: (7S)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE(Non-covalent)
1 x PGT: (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE(Non-covalent)
1 x T7X: Phosphatidylinositol(Non-covalent)
1 x PSF: 1,2-DICAPROYL-SN-PHOSPHATIDYL-L-SERINE(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Klusch, N. et al., A ferredoxin bridge connects the two arms of plant mitochondrial complex I. Plant Cell (2021)
Release Date
2021-12-15
Peptides
NADH-ubiquinone oxidoreductase chain 3: A
NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial: B
NADH dehydrogenase [ubiquinone] iron-sulfur protein 3: C
NADH dehydrogenase subunit 7: D
NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial: E
NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial: F
NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial: G
NADH-ubiquinone oxidoreductase chain 1: H
NADH dehydrogenase [ubiquinone] iron-sulfur protein 8-A, mitochondrial: I
NADH-ubiquinone oxidoreductase chain 6: J
NADH dehydrogenase subunit 4L: K
NADH-ubiquinone oxidoreductase chain 5: L
NADH-ubiquinone oxidoreductase chain 4: M
NADH-ubiquinone oxidoreductase chain 2: N
AT3G07480.1: O
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial: P
NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial: Q
NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial: R
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2: S
Acyl carrier protein 1, mitochondrial: T
Acyl carrier protein 2, mitochondrial: U
Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial: V
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6: W
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B: X
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-A: Y
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1: Z
At2g46540/F11C10.23: 0
Transmembrane protein: 1
Excitatory amino acid transporter: 2
NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B: 3
At4g16450: 4
ESSS subunit of NADH:ubiquinone oxidoreductase (Complex I) protein: 5
P1: 6
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2: 7
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-A: 8
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial: 9
B15 -- 1 beta subcomplex subunit 4: a
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9: b
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7: c
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B: d
Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12: e
Furry: f
unknown: g
Uncharacterized protein At2g27730, mitochondrial: h
Gamma carbonic anhydrase-like 2, mitochondrial: i
Gamma carbonic anhydrase 2, mitochondrial: j
Gamma carbonic anhydrase 1, mitochondrial: k
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
C
D
D
E
E
F
F
G
G
H
H
I
I
J
J
K
K
L
L
M
M
N
N
O
O
P
P
Q
Q
R
R
S
S
T
T
U
U
V
V
W
W
X
X
Y
Z
Z
a
0
b
1
c
2
d
3
e
4
f
5
g
6
i
7
j
8
k
9
l
a
m
b
n
c
o
d
p
e
q
f
r
g
u
h
v
i
x
j
y
k
z
Membrane
We predict this structure to be a membrane protein.

NADH-ubiquinone oxidoreductase chain 3

NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial

NADH dehydrogenase [ubiquinone] iron-sulfur protein 3

NADH dehydrogenase subunit 7

NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial

NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial

NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial

NADH-ubiquinone oxidoreductase chain 1

NADH dehydrogenase [ubiquinone] iron-sulfur protein 8-A, mitochondrial

NADH-ubiquinone oxidoreductase chain 6

NADH dehydrogenase subunit 4L

NADH-ubiquinone oxidoreductase chain 5

NADH-ubiquinone oxidoreductase chain 4

NADH-ubiquinone oxidoreductase chain 2

AT3G07480.1

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial

NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial

NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2

Acyl carrier protein 1, mitochondrial

Acyl carrier protein 2, mitochondrial

Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-A

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1

At2g46540/F11C10.23

Transmembrane protein

Excitatory amino acid transporter

NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B

At4g16450

ESSS subunit of NADH:ubiquinone oxidoreductase (Complex I) protein

P1

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-A

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial

B15 -- 1 beta subcomplex subunit 4

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B

Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12

Furry

unknown

Uncharacterized protein At2g27730, mitochondrial

Gamma carbonic anhydrase-like 2, mitochondrial

Gamma carbonic anhydrase 2, mitochondrial

Gamma carbonic anhydrase 1, mitochondrial

Related Entries With Identical Sequence

1pyh.1 | 1z56.1 | 2jes.1 | 3mk7.1 | 3mk7.2 | 3mk7.3 | 3mk7.4 | 4uq8.1 | 4v9j.1 | 4v9j.2 | 4v9k.1 | 4v9k.2 | 4v9l.1 | 4v9l.2 | 4v9m.1 | 4v9m.2 | 4w29.1 | 4w29.2 | 4wz7.1 | 5cod.1 | 5cod.2 | 5cod.3 | 5cod.4 | 5cod.5 | 5cod.6 | 5j4z.39 | 5j7y.39 | 5j8k.39 | 5lqy.1 | 5lqz.1  more...