SMTL ID : 7ab1.1

Crystal structure of MerTK kinase domain in complex with Gilteritinib

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

monomer

Ligands

1 x C6F: 6-ethyl-3-[[3-methoxy-4-[4-(4-methylpiperazin-1-yl)piperidin-1-yl]phenyl]amino]-5-(oxan-4-ylamino)pyrazine-2-carboxamide(Non-covalent)

C6F.1: 15 residues within 4Å: Chain A: L.27, V.35, A.51, I.84, L.105, P.106, F.107, M.108, K.109, G.111, D.112, Y.119, M.164, A.174, D.175 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.35, A:L.105, A:F.107, A:A.174 Hydrogen bonds: A:P.106, A:M.108

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: Y.235, P.236, L.253, K.254 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain A: R.121, G.231, M.232 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain A: R.85, P.106, M.108, R.166 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain A: R.18, I.22, L.23 Ligand excluded by PLIP

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.6: 5 residues within 4Å: Chain A: H.251, R.252, L.253, K.254, Y.264 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.252

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pflug, A. et al., A-loop interactions in Mer tyrosine kinase give rise to inhibitors with two-step mechanism and long residence time of binding. Biochem.J. (2020)

Release Date

2020-10-28

Peptides

Tyrosine-protein kinase Mer: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tyrosine-protein kinase Mer

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