SMTL ID : 7ab2.1

Crystal structure of MerTK kinase domain in complex with UNC2025

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

monomer

Ligands

1 x R6N: 4-[2-(butylamino)-5-[4-[(4-methylpiperazin-1-yl)methyl]phenyl]pyrrolo[2,3-d]pyrimidin-7-yl]cyclohexan-1-ol(Non-covalent)

R6N.1: 9 residues within 4Å: Chain A: V.35, A.51, L.105, P.106, F.107, M.108, K.109, D.112, M.164 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.35, A:V.35, A:A.51, A:L.105, A:F.107, A:D.112 Hydrogen bonds: A:P.106, A:M.108

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: Y.235, P.236, L.253, K.254 Ligand excluded by PLIP CL.3: 2 residues within 4Å: Chain A: R.121, M.232 Ligand excluded by PLIP CL.4: 5 residues within 4Å: Chain A: I.84, R.85, P.106, M.108, R.166 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain A: R.18, I.22, L.23 Ligand excluded by PLIP

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.6: 6 residues within 4Å: Chain A: G.250, H.251, R.252, L.253, K.254, Y.264 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.252 DMS.7: 4 residues within 4Å: Chain A: F.107, M.108, R.166, D.167 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.167 Water bridges: A:D.167 Salt bridges: A:D.167

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pflug, A. et al., A-loop interactions in Mer tyrosine kinase give rise to inhibitors with two-step mechanism and long residence time of binding. Biochem.J. (2020)

Release Date

2020-10-28

Peptides

Tyrosine-protein kinase Mer: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tyrosine-protein kinase Mer

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