SMTL ID : 7olv.1

MerTK kinase domain with type 1.5 inhibitor containing a di-methyl, cyano pyrazole group

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.13 Å

Oligo State

monomer

Ligands

1 x VK2: 4-[4-[5-[imidazo[1,2-a]pyridin-6-ylmethyl(methyl)amino]-1,3,4-oxadiazol-2-yl]-3-methyl-phenyl]-2,5-dimethyl-pyrazole-3-carbonitrile(Non-covalent)

VK2.1: 18 residues within 4Å: Chain A: V.35, A.51, F.68, E.71, A.72, M.75, I.84, L.86, V.89, V.103, L.105, P.106, F.107, M.108, M.164, A.174, D.175, F.176 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:A.51, A:I.84, A:L.105, A:F.176 Hydrogen bonds: A:M.108, A:D.175

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: Y.235, P.236, L.253, K.254 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain A: R.121, G.231, M.232 Ligand excluded by PLIP CL.4: 5 residues within 4Å: Chain A: I.84, R.85, P.106, M.108, R.166 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain A: F.107, R.166, D.167 Ligand excluded by PLIP

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.6: 4 residues within 4Å: Chain A: H.251, R.252, L.253, Y.264 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.252

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McCoull, W. et al., Optimization of an Imidazo[1,2- a ]pyridine Series to Afford Highly Selective Type I1/2 Dual Mer/Axl Kinase Inhibitors with In Vivo Efficacy. J.Med.Chem. (2021)

Release Date

2021-09-15

Peptides

Tyrosine-protein kinase Mer: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tyrosine-protein kinase Mer

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