SMTL ID : 7ag6.1

Crystal structure of SF kinase YihV from E. coli in complex with sulfofructose (SF), ADP-Mg

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.08 Å

Oligo State

homo-dimer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 20 residues within 4Å: Chain A: R.105, D.162, S.181, T.212, Q.213, G.214, S.215, G.217, A.231, F.232, V.236, T.239, A.242, G.243, F.246, S.268, A.271, A.272, C.275 Ligands: MG.3 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:D.162, A:T.212, A:T.212, A:Q.213, A:G.214, A:G.243, A:S.268 Water bridges: A:R.105, A:R.105, A:S.181, A:F.232, A:A.242, A:S.268, A:A.272 Salt bridges: A:R.105 ADP.4: 19 residues within 4Å: Chain B: R.105, D.162, S.181, T.212, Q.213, G.214, S.215, G.217, A.231, F.232, V.236, T.239, A.242, G.243, S.268, A.271, A.272, C.275 Ligands: MG.6 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:T.212, B:Q.213, B:G.214, B:G.243, B:S.268 Water bridges: B:R.105, B:G.241 Salt bridges: B:R.105

2 x RB8: 6-deoxy-6-sulfo-D-fructose(Non-covalent)

RB8.2: 13 residues within 4Å: Chain A: I.9, V.11, D.13, G.38, G.39, P.40, S.95, I.97, I.107, N.109, R.138, D.244 Chain B: K.27 9 PLIP interactions: 7 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:G.39, A:S.95, A:S.95, A:D.244, A:D.244, B:K.27 Water bridges: A:R.105 Salt bridges: A:R.138, B:K.27 RB8.5: 13 residues within 4Å: Chain A: K.27 Chain B: I.9, V.11, D.13, G.38, G.39, P.40, S.95, I.97, I.107, N.109, R.138, D.244 9 PLIP interactions: 7 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:G.39, B:S.95, B:S.95, B:D.244, B:D.244, A:K.27 Water bridges: B:R.105 Salt bridges: B:R.138, A:K.27

2 x MG: MAGNESIUM ION(Non-functional Binders)

MG.3: 1 residues within 4Å: Ligands: ADP.1 No protein-ligand interaction detected (PLIP) MG.6: 1 residues within 4Å: Ligands: ADP.4 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sharma, M. et al., Molecular Basis of Sulfosugar Selectivity in Sulfoglycolysis. Acs Cent.Sci. (2021)

Release Date

2021-04-14

Peptides

Sulfofructose kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Sulfofructose kinase

Related Entries With Identical Sequence