SMTL ID : 7ajo.1

The X-ray Structure of L,D-transpeptidase LdtA from Vibrio cholerae in complex with the cross-linking reaction intermediate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain A: Q.229, Q.235, D.237, V.239, G.241, Q.243, T.244 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.235, A:G.241, A:G.241, A:Q.243, A:T.244

1 x S2K: (2~{S},6~{S})-2-azanyl-6-[[(4~{R})-4-azanyl-5-oxidanyl-5-oxidanylidene-pentanoyl]amino]heptanedioic acid(Covalent)

S2K.2: 11 residues within 4Å: Chain A: W.325, P.328, K.330, A.405, Y.407, H.409, S.425, S.426, G.427, C.428, R.430 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:W.325, A:P.328 Hydrogen bonds: A:A.405, A:S.426, A:S.426, A:C.428 Salt bridges: A:H.409, A:R.430

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Batuecas, M.T. et al., The X-ray Structure of L,D-transpeptidase LdtA from Vibrio cholerae in complex with the cross-linking reaction intermediate. To Be Published

Release Date

2021-10-06

Peptides

L,D-transpeptidase YcbB: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

L,D-transpeptidase YcbB

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