SMTL ID : 7ajz.1 (1 other biounit)

The X-ray Structure of L,D-transpeptidase LdtA from Vibrio cholerae in complex with NAG-NAM(tetrapeptide)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.98 Å

Oligo State

monomer

Ligands

1 x ALA- DGL- API- DAL: NAG-NAM(tetrapeptide)(Non-covalent)

ALA-DGL-API-DAL.1: 12 residues within 4Å: Chain A: L.183, R.185, Q.229, Q.235, D.237, V.239, G.241, P.242, Q.243, T.244, N.418 Ligands: AMV.3 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.183, A:D.237 Hydrogen bonds: A:R.185, A:R.185, A:Q.229, A:D.237, A:D.237, A:D.237, A:G.241, A:Q.243, A:T.244, A:T.244

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 2 residues within 4Å: Chain A: I.470, W.475 No protein-ligand interaction detected (PLIP)

1 x AMV: methyl 2-acetamido-3-O-[(1R)-1-carboxyethyl]-2-deoxy-beta-D-glucopyranoside(Non-covalent)

AMV.3: 3 residues within 4Å: Chain A: N.418, N.419 Ligands: ALA-DGL-API-DAL.1 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:N.418

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Batuecas, M.T. et al., The X-ray Structure of L,D-transpeptidase LdtA from Vibrio cholerae in complex with NAG-NAM(tetrapeptide). To Be Published

Release Date

2021-10-06

Peptides

L,D-transpeptidase YcbB: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

L,D-transpeptidase YcbB

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