SMTL ID : 7ajx.1

The X-ray Structure of L,D-transpeptidase LdtA from Vibrio cholerae in complex with meropenem

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

monomer

Ligands

1 x MXR: (2S,3R,4S)-4-{[(3S,5R)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-2-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-3-methyl-3,4-dihydro-2H-pyrrole-5-carboxylic acid(Covalent)

MXR.1: 13 residues within 4Å: Chain A: W.325, I.331, D.335, I.336, Y.346, A.405, Y.407, H.409, S.425, S.426, G.427, C.428, R.430 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:W.325, A:I.331, A:Y.407 Hydrogen bonds: A:R.307, A:S.426, A:S.426, A:S.426, A:C.428 Salt bridges: A:H.409, A:R.430

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain A: Q.235, D.237, V.239, G.241, P.242, Q.243, T.244 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.237, A:G.241, A:G.241, A:Q.243, A:T.244

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Batuecas, M.T. et al., The X-ray Structure of L,D-transpeptidase LdtA from Vibrio cholerae in complex with meropenem. To Be Published

Release Date

2021-10-06

Peptides

L,D-transpeptidase YcbB: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

L,D-transpeptidase YcbB

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