SMTL ID : 7axd.1

Crystal structure of the hPXR-LBD in complex with fipronil

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

monomer

Ligands

1 x S6W: fipronil(Non-covalent)

S6W.1: 13 residues within 4Å: Chain A: M.125, M.128, S.129, F.133, F.163, C.166, Q.167, F.170, W.181, Y.188, F.311 Ligands: IPA.4, IPA.5 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.167 pi-Stacking: A:F.170 Halogen bonds: A:M.125, A:S.129, A:Q.167

5 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.2: 1 residues within 4Å: Chain A: W.105 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:W.105 IPA.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) IPA.4: 2 residues within 4Å: Chain A: M.125 Ligands: S6W.1 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:M.125 IPA.5: 5 residues within 4Å: Chain A: L.91, V.93, M.125, M.205 Ligands: S6W.1 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:V.93 IPA.6: 3 residues within 4Å: Chain A: L.217, E.219, Y.222 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:E.219 Hydrogen bonds: A:L.217 Water bridges: A:Y.222

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Delfosse, V. et al., Mechanistic insights into the synergistic activation of the RXR-PXR heterodimer by endocrine disruptor mixtures. Proc.Natl.Acad.Sci.USA (2021)

Release Date

2021-01-13

Peptides

Nuclear receptor subfamily 1 group I member 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nuclear receptor subfamily 1 group I member 2

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