- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.25 Å
- Oligo State
- homo-dimer
- Ligands
- 11 x SO4: SULFATE ION(Non-functional Binders)
- 2 x S92: 7-(cyclopropylamino)-5-(5-(6-oxo-1,6-dihydropyridin-3-yl)-1-(2-(piperidin-1-yl)ethyl)-1H-1,2,3-triazol-4-yl)pyrazolo[1,5-a]pyrimidine-3-carbonitrile(Non-covalent)
S92.6: 18 residues within 4Å:- Chain A: L.45, G.46, R.47, V.53, V.66, K.68, I.95, F.113, E.114, H.115, V.116, N.118, H.160, M.163, I.174, D.175
- Ligands: EDO.11, EDO.19
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:V.53, A:V.53, A:V.66, A:I.174
- Hydrogen bonds: A:V.116, A:V.116, A:D.175
- Water bridges: A:W.176
S92.26: 16 residues within 4Å:- Chain B: L.45, G.46, R.47, V.53, V.66, K.68, I.95, F.113, E.114, H.115, V.116, N.118, H.160, M.163, I.174, D.175
9 PLIP interactions:9 interactions with chain B- Hydrophobic interactions: B:L.45, B:V.53, B:V.53, B:I.174
- Hydrogen bonds: B:V.116, B:V.116, B:D.175, B:D.175
- Water bridges: B:E.81
- 24 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.7: 1 residues within 4Å:- Chain A: K.44
Ligand excluded by PLIPEDO.8: 5 residues within 4Å:- Chain A: R.191, V.192, K.198, N.238
- Ligands: EDO.14
Ligand excluded by PLIPEDO.9: 3 residues within 4Å:- Chain A: E.252, S.277, R.278
Ligand excluded by PLIPEDO.10: 7 residues within 4Å:- Chain A: K.229, F.232, F.233, R.244, V.248, F.284
- Ligands: SO4.2
Ligand excluded by PLIPEDO.11: 3 residues within 4Å:- Chain A: G.46, R.47
- Ligands: S92.6
Ligand excluded by PLIPEDO.12: 5 residues within 4Å:- Chain A: Q.36, Y.39, V.67, D.103, P.104
Ligand excluded by PLIPEDO.13: 4 residues within 4Å:- Chain A: S.277, R.278, K.279, R.280
Ligand excluded by PLIPEDO.14: 4 residues within 4Å:- Chain A: S.194, R.195, N.238
- Ligands: EDO.8
Ligand excluded by PLIPEDO.15: 3 residues within 4Å:- Chain A: H.276, S.277, K.279
Ligand excluded by PLIPEDO.16: 2 residues within 4Å:- Chain A: P.322, Y.325
Ligand excluded by PLIPEDO.17: 2 residues within 4Å:- Chain A: Y.196, H.234
Ligand excluded by PLIPEDO.18: 4 residues within 4Å:- Chain A: Y.131, D.132, F.135, R.169
Ligand excluded by PLIPEDO.19: 3 residues within 4Å:- Chain A: H.160, M.163
- Ligands: S92.6
Ligand excluded by PLIPEDO.27: 7 residues within 4Å:- Chain B: V.248, L.249, R.278, K.279, W.281, D.302
- Ligands: EDO.36
Ligand excluded by PLIPEDO.28: 4 residues within 4Å:- Chain B: W.24, D.25, Y.26, E.27
Ligand excluded by PLIPEDO.29: 2 residues within 4Å:- Chain B: Y.12, V.15
Ligand excluded by PLIPEDO.30: 4 residues within 4Å:- Chain B: R.8, D.14, T.17, P.184
Ligand excluded by PLIPEDO.31: 5 residues within 4Å:- Chain B: E.282, V.285, S.294, P.295, L.298
Ligand excluded by PLIPEDO.32: 3 residues within 4Å:- Chain B: R.278
- Ligands: EDO.33, EDO.36
Ligand excluded by PLIPEDO.33: 6 residues within 4Å:- Chain B: D.299, D.302, K.303, R.306
- Ligands: EDO.32, EDO.36
Ligand excluded by PLIPEDO.34: 3 residues within 4Å:- Chain B: H.276, S.277, K.279
Ligand excluded by PLIPEDO.35: 6 residues within 4Å:- Chain B: P.6, S.7, R.8, P.184, G.185, M.208
Ligand excluded by PLIPEDO.36: 6 residues within 4Å:- Chain B: W.281, L.298, D.302
- Ligands: EDO.27, EDO.32, EDO.33
Ligand excluded by PLIPEDO.37: 5 residues within 4Å:- Chain B: L.203, N.238, Y.239, D.266, F.269
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Date, M., Metadynamics simulations of CK2 compound unbinding to understand slow dissociation kinetics. To Be Published
- Release Date
- 2021-11-24
- Peptides
- Casein kinase II subunit alpha: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.25 Å
- Oligo State
- homo-dimer
- Ligands
- 11 x SO4: SULFATE ION(Non-functional Binders)
- 2 x S92: 7-(cyclopropylamino)-5-(5-(6-oxo-1,6-dihydropyridin-3-yl)-1-(2-(piperidin-1-yl)ethyl)-1H-1,2,3-triazol-4-yl)pyrazolo[1,5-a]pyrimidine-3-carbonitrile(Non-covalent)
- 24 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Date, M., Metadynamics simulations of CK2 compound unbinding to understand slow dissociation kinetics. To Be Published
- Release Date
- 2021-11-24
- Peptides
- Casein kinase II subunit alpha: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
A