- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.45 Å
- Oligo State
- monomer
- Ligands
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 14 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.5: 4 residues within 4Å:- Chain A: W.24, D.25, Y.26, E.27
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:D.25, A:D.25, A:Y.26, A:E.27
EDO.6: 3 residues within 4Å:- Chain A: R.280, W.281, E.282
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:E.282
EDO.7: 3 residues within 4Å:- Chain A: H.276, S.277, K.279
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:S.277, A:S.277, A:K.279
EDO.8: 4 residues within 4Å:- Chain A: R.191, V.192, K.198, N.238
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:R.191, A:R.191, A:K.198, A:K.198, A:N.238
EDO.9: 8 residues within 4Å:- Chain A: R.8, A.9, R.10, V.11, D.210, Y.211, S.212, Q.310
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.10, A:D.210, A:S.212
EDO.10: 7 residues within 4Å:- Chain A: K.229, F.232, F.233, R.244, V.248, F.284
- Ligands: SO4.2
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.244
- Water bridges: A:K.229
EDO.11: 3 residues within 4Å:- Chain A: G.48, K.49
- Ligands: S8W.19
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.49
EDO.12: 4 residues within 4Å:- Chain A: Y.131, D.132, F.135, R.169
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.132, A:R.169
EDO.13: 2 residues within 4Å:- Chain A: D.299, K.303
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.303
EDO.14: 5 residues within 4Å:- Chain A: Q.36, Y.39, L.41, V.67, A.110
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.36, A:Y.39
EDO.15: 4 residues within 4Å:- Chain A: R.278, K.279, R.280, R.283
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.278, A:R.280, A:R.280
EDO.16: 3 residues within 4Å:- Chain A: E.252, S.277, R.278
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.252, A:R.278
EDO.17: 3 residues within 4Å:- Chain A: Y.196, P.231, H.234
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Y.196
EDO.18: 2 residues within 4Å:- Chain A: K.170, R.172
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.170, A:R.172
- 1 x S8W: ~{N}-[2-[(1~{R},2~{R})-2-(aminomethyl)cyclopropyl]-5-[[3-cyano-7-(cyclopropylamino)pyrazolo[1,5-a]pyrimidin-5-yl]amino]phenyl]ethanamide(Non-covalent)
S8W.19: 15 residues within 4Å:- Chain A: L.45, S.51, V.53, V.66, K.68, I.95, F.113, E.114, H.115, V.116, N.118, M.163, I.174, D.175
- Ligands: EDO.11
13 PLIP interactions:13 interactions with chain A- Hydrophobic interactions: A:L.45, A:L.45, A:V.53, A:V.66, A:K.68, A:I.174
- Hydrogen bonds: A:K.68, A:V.116, A:D.175, A:D.175, A:D.175, A:D.175
- Water bridges: A:L.45
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Date, M., Metadynamics simulations of CK2 compound unbinding to understand slow dissociation kinetics. To Be Published
- Release Date
- 2021-11-24
- Peptides
- Casein kinase II subunit alpha: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.45 Å
- Oligo State
- monomer
- Ligands
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 14 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 1 x S8W: ~{N}-[2-[(1~{R},2~{R})-2-(aminomethyl)cyclopropyl]-5-[[3-cyano-7-(cyclopropylamino)pyrazolo[1,5-a]pyrimidin-5-yl]amino]phenyl]ethanamide(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Date, M., Metadynamics simulations of CK2 compound unbinding to understand slow dissociation kinetics. To Be Published
- Release Date
- 2021-11-24
- Peptides
- Casein kinase II subunit alpha: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
B