SMTL ID : 7b1b.1

Cryo-EM of Aedes Aegypti Toll5A dimer bound to Spz1C

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-mer

Ligands

5 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 5 residues within 4Å: Chain A: N.607, C.608, S.609, E.637, N.638 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:N.638 Hydrogen bonds: A:E.637 NAG-NAG-BMA.2: 3 residues within 4Å: Chain A: S.99, N.124, R.147 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.3: 5 residues within 4Å: Chain A: F.142, L.143, N.144, L.165, N.167 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.143, A:N.144 NAG-NAG-BMA.5: 6 residues within 4Å: Chain D: K.70, R.98, S.99, E.123, N.124, R.147 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.7: 4 residues within 4Å: Chain B: Q.51 Chain D: N.494, Y.518, R.520 1 PLIP interactions: 1 interactions with chain D Hydrophobic interactions: D:Y.518

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.4: 5 residues within 4Å: Chain D: L.143, N.144, A.164, L.165, N.167 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 5 residues within 4Å: Chain D: N.392, N.416, N.417, Q.418, N.454 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.8: 4 residues within 4Å: Chain A: N.416, R.453, N.454, F.478 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.478 Hydrogen bonds: A:R.453 NAG.9: 4 residues within 4Å: Chain A: N.494, Y.518, Q.519, R.520 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.494 NAG.10: 3 residues within 4Å: Chain A: N.638, N.660, Q.682 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:N.638, A:N.660 Hydrogen bonds: A:N.638

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Saucereau, Y. et al., Structure and dynamics of Toll immunoreceptor activation in the mosquito Aedes aegypti. Nat Commun (2022)

Release Date

2022-07-13

Peptides

Toll-like receptor: AD
AAEL013433-PA: BC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
B

B
D

C
P

Toll-like receptor

AAEL013433-PA

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