SMTL ID : 7b1c.1

Cryo-EM of Aedes Aegypti Toll5A trimer bound to Spz1C

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-2-mer

Ligands

6 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 5 residues within 4Å: Chain A: K.70, R.98, S.99, N.124, R.147 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.4: 3 residues within 4Å: Chain B: N.494, P.517, Q.519 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.5: 4 residues within 4Å: Chain B: G.141, L.143, S.166, N.167 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.6: 5 residues within 4Å: Chain B: K.70, R.98, S.99, N.124, R.147 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.10: 2 residues within 4Å: Chain E: N.494, Y.518 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.11: 4 residues within 4Å: Chain E: N.607, S.609, H.635, E.637 No protein-ligand interaction detected (PLIP)

7 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 4 residues within 4Å: Chain A: N.144, A.164, L.165, N.167 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 3 residues within 4Å: Chain A: N.416, Q.418, N.454 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.416 NAG-NAG.7: 3 residues within 4Å: Chain B: Q.415, N.416, N.454 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.416 NAG-NAG.8: 3 residues within 4Å: Chain B: Q.594, N.607, H.635 No protein-ligand interaction detected (PLIP) NAG-NAG.9: 5 residues within 4Å: Chain E: N.416, Q.418, R.453, N.454, F.478 No protein-ligand interaction detected (PLIP) NAG-NAG.12: 5 residues within 4Å: Chain E: L.143, N.144, A.164, S.166, N.167 No protein-ligand interaction detected (PLIP) NAG-NAG.13: 4 residues within 4Å: Chain E: R.98, S.99, N.124, R.147 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.14: 8 residues within 4Å: Chain A: Q.492, S.493, N.494, Q.516, P.517, Y.518, Q.519, I.521 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Q.516, A:Q.519, A:I.521 Hydrogen bonds: A:Y.518 NAG.15: 6 residues within 4Å: Chain B: R.611, V.636, E.637, N.638, R.659, N.660 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:E.637, B:R.659 Hydrogen bonds: B:V.636, B:N.638, B:R.659 NAG.16: 6 residues within 4Å: Chain E: S.477, F.478, N.498, S.500, N.501, D.524 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:S.477, E:N.498, E:D.524

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Saucereau, Y. et al., Structure and dynamics of Toll immunoreceptor activation in the mosquito Aedes aegypti. Nat Commun (2022)

Release Date

2022-07-13

Peptides

Toll-like receptor: ABE
AAEL013433-PA: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
A

E
B

C
D

D
P

Toll-like receptor

AAEL013433-PA

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