SMTL ID : 7bea.1

Structure of human Programmed cell death 1 ligand 1 (PD-L1) with inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

homo-dimer

Ligands

1 x TK2: 2-(aminomethyl)-6-[(2-methyl-3-phenyl-phenyl)methoxy]-~{N}-(2-phenylethyl)imidazo[1,2-a]pyridin-3-amine(Non-covalent)

TK2.1: 17 residues within 4Å: Chain A: I.37, Y.39, M.98, I.99, S.100, A.104, D.105, Y.106, K.107, R.108 Chain B: Y.39, Q.49, M.98, I.99, S.100, A.104, D.105 11 PLIP interactions: 7 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:I.37, A:A.104, A:Y.106, A:K.107, B:Y.39, B:Q.49, B:M.98, B:A.104 pi-Stacking: A:Y.39 pi-Cation interactions: A:K.107, A:R.108

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Butera, R. et al., Design, Synthesis, and Biological Evaluation of Imidazopyridines as PD-1/PD-L1 Antagonists. Acs Med.Chem.Lett. (2021)

Release Date

2021-06-09

Peptides

Programmed cell death 1 ligand 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Programmed cell death 1 ligand 1

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