SMTL ID : 7bjv.3 (2 other biounits)

Crystal structure of the ligand-binding domains of the heterodimer EcR/USP bound to the synthetic agonist BYI09181

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.05 Å

Oligo State

hetero-1-1-mer

Ligands

1 x EPH: L-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL-PHOSPHATIDYLETHANOLAMINE(Non-covalent)

EPH.1: 18 residues within 4Å: Chain A: V.35, P.36, F.39, V.43, L.46, N.84, L.87, L.88, M.120, L.128, Q.135, A.136, V.138, S.228, H.231, L.232, F.235, L.237 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.39, A:V.43, A:L.46, A:L.87, A:L.88, A:L.128, A:A.136, A:V.138, A:H.231, A:L.232, A:F.235, A:L.237 Hydrogen bonds: A:Q.135

1 x U0H: ~{N}-~{tert}-butyl-2-methoxy-~{N}'-(3-methoxy-2-methyl-phenyl)carbonyl-pyridine-3-carbohydrazide(Non-covalent)

U0H.2: 17 residues within 4Å: Chain B: I.73, T.77, S.111, M.114, M.115, V.118, Y.137, Y.142, V.150, D.153, L.154, L.234, Q.237, N.238, M.241, L.252, W.260 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:Y.137, B:V.150, B:L.154, B:Q.237, B:M.241, B:L.252, B:W.260 Hydrogen bonds: B:Y.142, B:N.238

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 2 residues within 4Å: Chain B: S.30, A.33 No protein-ligand interaction detected (PLIP) PEG.4: 5 residues within 4Å: Chain B: G.93, K.96, E.194, I.195, Y.198 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.96

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Browning, C. et al., Nonsteroidal ecdysone receptor agonists use a water channel for binding to the ecdysone receptor complex EcR/USP. J Pestic Sci (2021)

Release Date

2021-04-07

Peptides

Ultraspiracle protein: A
Ecdysone Receptor: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
F

Ultraspiracle protein

Ecdysone Receptor

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