SMTL ID : 7bos.1

Human SIRT2 in complex with myristoyl thiourea inhibitor, No.13

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x P6S- LYS- ARG- ARG- NH2: Myristoyl thiourea inhibitor, No.13(Non-covalent)

P6S-LYS-ARG-ARG-NH2.1: 14 residues within 4Å: Chain A: E.65, H.136, V.182, F.183, F.184, G.185, E.186, S.187, L.188, Q.214, V.215, Q.216, P.217 Ligands: F4R.3 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.184, A:F.184, A:L.188, A:V.215, A:Q.216 Hydrogen bonds: A:H.136, A:G.185, A:E.186, A:Q.216, A:Q.216 Salt bridges: A:E.65 pi-Cation interactions: A:F.184

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.144, C.149, C.170, C.173 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.144, A:C.149, A:C.170, A:C.173

1 x F4R: N-dodecylmethanethioamide(Non-covalent)

F4R.3: 10 residues within 4Å: Chain A: F.68, F.80, L.83, A.84, Y.88, I.118, H.136, I.181, V.182 Ligands: P6S-LYS-ARG-ARG-NH2.1 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.68, A:F.68, A:F.80, A:L.83, A:A.84, A:Y.88, A:I.118, A:I.181 Hydrogen bonds: A:Q.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nielsen, A.L. et al., Mechanism-based inhibitors of SIRT2: structure-activity relationship, X-ray structures, target engagement, regulation of alpha-tubulin acetylation and inhibition of breast cancer cell migration. Rsc Chem Biol (2021)

Release Date

2021-03-24

Peptides

NAD-dependent protein deacetylase sirtuin-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NAD-dependent protein deacetylase sirtuin-2

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