SMTL ID : 7bot.1

Human SIRT2 in complex with myristoyl thiourea inhibitor, No.23

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x P6S- LYS- AIB- ARG- NH2: myristoyl thiourea inhibitor, No.23(Non-covalent)

P6S-LYS-AIB-ARG-NH2.1: 12 residues within 4Å: Chain A: H.136, V.182, F.183, F.184, G.185, E.186, S.187, L.188, Q.214, V.215, Q.216 Ligands: F4R.3 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.184, A:F.184, A:L.188 Hydrogen bonds: A:H.136, A:G.185, A:L.188, A:Q.214, A:Q.214, A:Q.216, A:Q.216

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: C.144, C.149, H.151, C.170, C.173 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.144, A:C.149, A:C.170, A:C.173

1 x F4R: N-dodecylmethanethioamide(Non-covalent)

F4R.3: 10 residues within 4Å: Chain A: F.45, F.68, F.80, L.83, A.84, I.118, H.136, I.181, V.182 Ligands: P6S-LYS-AIB-ARG-NH2.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.45, A:F.68, A:F.68, A:F.68, A:F.80, A:L.83, A:I.118

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nielsen, A.L. et al., Mechanism-based inhibitors of SIRT2: structure-activity relationship, X-ray structures, target engagement, regulation of alpha-tubulin acetylation and inhibition of breast cancer cell migration. Rsc Chem Biol (2021)

Release Date

2021-03-24

Peptides

NAD-dependent protein deacetylase sirtuin-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NAD-dependent protein deacetylase sirtuin-2

Related Entries With Identical Sequence