SMTL ID : 7bsb.1 (1 other biounit)

Mevo lectin- Native form-2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

homo-heptamer

Ligands

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: G.17, G.18, G.132, S.133, D.134, D.136 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.18, A:G.132, A:S.133, A:S.133, A:D.134, A:D.134 GOL.2: 6 residues within 4Å: Chain A: E.12, V.13, G.14, Y.86 Chain B: K.34, E.68 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:K.34, B:K.34, A:G.14, A:G.14 GOL.5: 7 residues within 4Å: Chain B: G.17, G.18, R.93, G.132, S.133, D.134, D.136 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.18, B:G.132, B:S.133, B:D.134 GOL.6: 6 residues within 4Å: Chain C: G.17, G.18, G.132, S.133, D.134, D.136 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:G.18, C:G.132, C:S.133, C:S.133, C:D.134, C:D.134 GOL.7: 7 residues within 4Å: Chain D: G.17, G.18, R.93, G.132, S.133, D.134, D.136 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:G.18, D:G.132, D:S.133, D:S.133, D:D.134, D:D.134, D:D.136 GOL.9: 7 residues within 4Å: Chain E: G.17, G.18, R.93, G.132, S.133, D.134, D.136 6 PLIP interactions: 6 interactions with chain E Hydrogen bonds: E:G.18, E:G.132, E:S.133, E:S.133, E:D.134, E:D.134 GOL.15: 7 residues within 4Å: Chain G: G.17, G.18, R.93, G.132, S.133, D.134, D.136 5 PLIP interactions: 5 interactions with chain G Hydrogen bonds: G:G.18, G:G.132, G:S.133, G:D.134, G:D.134

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 4 residues within 4Å: Chain A: H.45, K.64, S.133, D.134 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.64, A:K.64 EDO.4: 6 residues within 4Å: Chain A: K.34, E.68 Chain E: E.12, V.13, G.14, Y.86 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain E Hydrogen bonds: A:K.34, A:K.34, E:G.14, E:G.14 EDO.8: 4 residues within 4Å: Chain D: Y.41, K.64, S.133, D.134 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:K.64, D:K.64, D:R.93 EDO.10: 5 residues within 4Å: Chain E: Y.41, L.43, K.64, S.133, D.134 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:K.64, E:K.64 EDO.11: 5 residues within 4Å: Chain C: K.34 Chain F: E.12, V.13, G.14, Y.86 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain F Hydrogen bonds: C:K.34, F:G.14 EDO.12: 4 residues within 4Å: Chain F: G.132, S.133, D.134, D.136 5 PLIP interactions: 5 interactions with chain F Hydrogen bonds: F:G.132, F:S.133, F:S.133, F:D.134, F:D.136 EDO.13: 7 residues within 4Å: Chain F: K.34, E.68, I.70 Chain G: E.12, V.13, G.14, Y.86 4 PLIP interactions: 2 interactions with chain G, 2 interactions with chain F Hydrogen bonds: G:E.12, G:G.14, F:K.34, F:K.34 EDO.14: 7 residues within 4Å: Chain B: E.12, V.13, G.14, Y.86 Chain G: K.34, E.68, I.70 4 PLIP interactions: 2 interactions with chain G, 2 interactions with chain B Hydrogen bonds: G:K.34, G:K.34, B:G.14, B:G.14

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sivaji, N. et al., Structural and related studies on Mevo lectin from Methanococcus voltae A3: the first thorough characterization of an archeal lectin and its interactions. Glycobiology (2021)

Release Date

2021-02-03

Peptides

lectin: ABCDEFG

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
G

C
A

D
D

E
E

F
F

G
C

lectin

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