SMTL ID : 7bsm.2 (1 other biounit)

Mevo lectin complex with 2alpha-mannobiose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-heptamer

Ligands

5 x MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose(Non-covalent)

MAN-MAN.1: 7 residues within 4Å: Chain C: G.17, G.18, R.93, G.132, S.133, D.134, D.136 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:G.18, C:G.132, C:S.133, C:D.134, C:D.134 MAN-MAN.2: 7 residues within 4Å: Chain D: G.17, G.18, R.93, G.132, S.133, D.134, D.136 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:G.18, D:G.132, D:S.133, D:D.134, D:D.134, D:D.136 MAN-MAN.3: 7 residues within 4Å: Chain E: G.17, G.18, R.93, G.132, S.133, D.134, D.136 4 PLIP interactions: 4 interactions with chain E Hydrogen bonds: E:G.18, E:R.93, E:S.133, E:D.134 MAN-MAN.4: 7 residues within 4Å: Chain F: G.17, G.18, R.93, G.132, S.133, D.134, D.136 5 PLIP interactions: 5 interactions with chain F Hydrogen bonds: F:G.18, F:G.132, F:S.133, F:D.134, F:D.134 MAN-MAN.5: 7 residues within 4Å: Chain G: G.17, G.18, R.93, G.132, S.133, D.134, D.136 5 PLIP interactions: 5 interactions with chain G Hydrogen bonds: G:G.18, G:G.132, G:S.133, G:D.134, G:D.134

3 x MAN: alpha-D-mannopyranose(Non-covalent)

MAN.6: 3 residues within 4Å: Chain A: R.93, S.133 Ligands: MAN.7 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.93, A:S.133, A:S.133 Salt bridges: A:K.64 MAN.7: 8 residues within 4Å: Chain A: G.17, G.18, R.93, G.132, S.133, D.134, D.136 Ligands: MAN.6 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.18, A:G.132, A:S.133, A:D.134, A:D.134 MAN.9: 7 residues within 4Å: Chain B: G.17, G.18, R.93, G.132, S.133, D.134, D.136 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:G.18, B:G.132, B:S.133, B:S.133, B:D.134, B:D.134

1 x ALA: ALANINE(Non-covalent)

ALA.8: 1 residues within 4Å: Chain B: K.144 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sivaji, N. et al., Structural and related studies on Mevo lectin from Methanococcus voltae A3: the first thorough characterization of an archeal lectin and its interactions. Glycobiology (2021)

Release Date

2021-02-03

Peptides

lectin: ABCDEFG

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
I

C
J

D
K

E
L

F
M

G
N

lectin

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